Bdis005614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombylius discolor
Gene Symbol
-
Assembly
GCA_939192785.1
Location
CALNDV010000363.1:119442-123353[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00044 0.025 15.0 0.3 1 23 365 388 365 388 0.95
2 12 0.00016 0.0091 16.4 1.5 1 23 396 418 396 418 0.97
3 12 6e-06 0.00035 20.8 1.2 1 23 425 447 425 447 0.98
4 12 5.3e-06 0.0003 21.0 1.0 1 23 453 475 453 475 0.99
5 12 4.9e-06 0.00029 21.1 0.7 1 23 482 504 482 504 0.99
6 12 8.1e-05 0.0047 17.3 0.4 1 23 510 532 510 532 0.96
7 12 1.4e-05 0.00083 19.6 0.3 1 23 538 560 538 560 0.98
8 12 1.9e-06 0.00011 22.4 1.2 1 23 566 589 566 589 0.96
9 12 1.1e-05 0.00065 20.0 1.2 1 23 595 618 595 618 0.97
10 12 8e-05 0.0046 17.3 2.5 1 23 624 646 624 646 0.99
11 12 4.8e-05 0.0028 18.0 0.6 1 23 652 674 652 674 0.96
12 12 0.0048 0.28 11.7 0.1 1 22 680 701 680 704 0.91

Sequence Information

Coding Sequence
ATGACAAGTACAGTAGAACAAAAAGTATACAGTGAAATTGAAAGTAAACAAGCAAAATGTTTTTCATGCAATAAATTTATCGATTCCAATAAGGAAGAAGTTCTGTTACTTTTTGAAAAACGTATTGATGAAAATGGCATTGAAAACTCTCCATTGTCCGAAATTCTGTCATCAATTCTTTCTAGAAATATTGATAAAAATAATTCACATTCAAAATTTATATGCCAACCGTGCACACAAATTCTTCAAGAATTCGAATTAATTGAACAACATTACATTGAACTAAAATGTAAAATTATACGTAATTTTAATAAAGTAGCCAAGGAAAATAATATTCCAGAAGTAGAATTGGGTGATATTGTGATTGAAGAGGATGATAATGAAAGAATTATTGAGTTTCACACTTCTACATTTCTTGAATCACAAACTTCCGAAAGTGAAGATGAAGAACACAAACGCCATTACCAAGATAATAATGATATTAAAAAAAACTCATTCGATGTTGAAGAAATTAAAACAAAAGACATTTCAAAATCAAATTTAAATAATTTCAATGAAATTGTTACAGTTCCTGTAATATCTGAAGAAGACTATGATAGTCAGAATGAAGATCAATCTGAACAAATTTTTGTACATGATGAAGATCATATAATTGAAATAATGCCAAATGAAGATGTTCATTATGAACACATTATCGAGCAAAATTCAGATACCAATGACATAATTTCTAATGAAACGGATTGTAGTAACTTGGAAAATACATCAGATATAAGCGATGAAAAAGATTCTAATTTGATTAAAGTAGAAAATATAAATTTAATAAATAATACTTCAACATCACCACAATTTAATACTAATAAAAGACATAGAATAAATAAAGTGGAAAAAATCTTACCATCTTCTCAACCAGTTTATGTAATGAATGGAGAAAAAGTGGTTTGTTTAATTTGTAACCCAAATTATTTCCAAGATAATTGTGTAAATAATATTATAACTTCAGAGTCTTTAGAATCAGATGAGCAAAAATCTATAATTGAATTTGATTTTCGTACAATTAGTATTCATTTAAAAAGCATTCATAATATTCGAGTATATATTTGTGACATATGCGGTAAAGAATTTTATAAAAGAAACGAAATGAATGATCATGTTGATAAAGAACATGGTGGAACTAAAGATGGTAAATATAGTTGTGAAATATGTAATAGAATATTTACAAATTTACGATTATTTCGTGTACATAAAAAATTACATTATAATTTAATaaaacaatattcatgcaaacaatgtgataaaaaatatatatcaaaaaatttacttgaagaacatatgaatatgcatactggagaaagaccatataaatgtagttattgtgcaaaagattttgcatcaaaatatacattaacagctcatttgaaaattcatcaaaatcgtccaagaccatatgtatgctcaatatgttcaaaagcttttttcaatgcacaaaatttacaacaacatgaaaaaactcattctggtattaaagaatttatttgtgaaatatgtcaaaaagcattcggtacacaacataatctagatgttcataaaattgtacatactggttataaaccatatatttgtcgtatatgtggtaaagcttttgcaagacgaacagaaattaaagatcatgaacgtactcatactggtgaaaaaccattttcatgtaatatttgtaatatgtcatttgcacaacgttcaaatttaacaacacataaacgtgcaacacatttaaatgataaacgttttaaatgtgatcaatgtgatcgatcatttaaaagacgacgtttacttgattatcatattcgtgcagctcatactggagaacgtccttataaatgtaatgtatgtgcatcatcatttgtatacccagaacatttcaaaaagcatcaacgtattcatagtggagaaaaaccatatgcatgtgaggtttgtggaaaaaaattcaatagtagagataatcgaaatgcacatcgttttgtacatagcgacaaaaaaccatacgaatgtttaagttgtggtcaaggatttaTGCGTAAACCATTGTTATATAGTCATATGCAACAAGCAGGTCATATAAATGATACTATAGTAGTGAATCAGCCTCGAATTTCTAAAGACGGTGAGTTAGTTAAAATAGATGAAGATGATTTAATTGATCAAGAAAATCAAGAAACTATTGAAGAACATTTTATAATCAATACTGACGTTCAAGGAGGAATCACAAGTGAAAATGAAGATGTTATTCCAACTCAAATACTAGCTGCTGAACATGCAAATATTGCAGAAGTTATAACACCTGATCAAGTTTTAATTGATAATAGTGATAGTGATAATCAAATAATTAAATCAGAAAATTGTCTTATGCACATTGTTCAAGTAATGCCCGAATAA
Protein Sequence
MTSTVEQKVYSEIESKQAKCFSCNKFIDSNKEEVLLLFEKRIDENGIENSPLSEILSSILSRNIDKNNSHSKFICQPCTQILQEFELIEQHYIELKCKIIRNFNKVAKENNIPEVELGDIVIEEDDNERIIEFHTSTFLESQTSESEDEEHKRHYQDNNDIKKNSFDVEEIKTKDISKSNLNNFNEIVTVPVISEEDYDSQNEDQSEQIFVHDEDHIIEIMPNEDVHYEHIIEQNSDTNDIISNETDCSNLENTSDISDEKDSNLIKVENINLINNTSTSPQFNTNKRHRINKVEKILPSSQPVYVMNGEKVVCLICNPNYFQDNCVNNIITSESLESDEQKSIIEFDFRTISIHLKSIHNIRVYICDICGKEFYKRNEMNDHVDKEHGGTKDGKYSCEICNRIFTNLRLFRVHKKLHYNLIKQYSCKQCDKKYISKNLLEEHMNMHTGERPYKCSYCAKDFASKYTLTAHLKIHQNRPRPYVCSICSKAFFNAQNLQQHEKTHSGIKEFICEICQKAFGTQHNLDVHKIVHTGYKPYICRICGKAFARRTEIKDHERTHTGEKPFSCNICNMSFAQRSNLTTHKRATHLNDKRFKCDQCDRSFKRRRLLDYHIRAAHTGERPYKCNVCASSFVYPEHFKKHQRIHSGEKPYACEVCGKKFNSRDNRNAHRFVHSDKKPYECLSCGQGFMRKPLLYSHMQQAGHINDTIVVNQPRISKDGELVKIDEDDLIDQENQETIEEHFIINTDVQGGITSENEDVIPTQILAAEHANIAEVITPDQVLIDNSDSDNQIIKSENCLMHIVQVMPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00235223;
90% Identity
iTF_00235223;
80% Identity
-