Basic Information

Insect: Bombus waltoni
Gene Symbol: gtf3a
Assembly: GCA_014737395.1
Location: JACXII010000017.1:16747-22934[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0017 0.13 12.6 0.1 2 23 734 755 733 755 0.96

2 16 0.78 61 4.2 1.5 3 23 789 809 788 809 0.97

3 16 0.00023 0.018 15.3 1.2 3 23 818 839 817 839 0.98

4 16 0.0023 0.18 12.2 2.0 1 23 846 869 846 869 0.95

5 16 8.3e-05 0.0065 16.7 0.7 1 23 875 898 875 898 0.94

6 16 1.1 89 3.7 2.5 2 23 906 926 906 926 0.94

7 16 1.2e-07 9.6e-06 25.6 2.1 2 23 932 953 931 953 0.97

8 16 4.4e-06 0.00035 20.7 0.3 1 23 959 981 959 981 0.99

9 16 0.00049 0.038 14.3 2.4 2 23 993 1015 992 1015 0.95

10 16 0.0015 0.12 12.8 2.3 1 23 1021 1044 1021 1044 0.96

11 16 0.022 1.7 9.1 3.8 3 23 1067 1088 1066 1088 0.95

12 16 0.001 0.08 13.3 1.4 2 23 1095 1117 1094 1117 0.96

13 16 3.4e-05 0.0026 18.0 1.0 2 23 1125 1146 1124 1146 0.96

14 16 0.0019 0.15 12.5 2.3 1 23 1152 1175 1152 1175 0.96

15 16 0.28 22 5.6 3.2 2 23 1182 1203 1181 1203 0.96

16 16 0.0083 0.65 10.4 2.6 1 23 1209 1231 1209 1231 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0017	0.13	12.6	0.1	2	23	734	755	733	755	0.96
2	16	0.78	61	4.2	1.5	3	23	789	809	788	809	0.97
3	16	0.00023	0.018	15.3	1.2	3	23	818	839	817	839	0.98
4	16	0.0023	0.18	12.2	2.0	1	23	846	869	846	869	0.95
5	16	8.3e-05	0.0065	16.7	0.7	1	23	875	898	875	898	0.94
6	16	1.1	89	3.7	2.5	2	23	906	926	906	926	0.94
7	16	1.2e-07	9.6e-06	25.6	2.1	2	23	932	953	931	953	0.97
8	16	4.4e-06	0.00035	20.7	0.3	1	23	959	981	959	981	0.99
9	16	0.00049	0.038	14.3	2.4	2	23	993	1015	992	1015	0.95
10	16	0.0015	0.12	12.8	2.3	1	23	1021	1044	1021	1044	0.96
11	16	0.022	1.7	9.1	3.8	3	23	1067	1088	1066	1088	0.95
12	16	0.001	0.08	13.3	1.4	2	23	1095	1117	1094	1117	0.96
13	16	3.4e-05	0.0026	18.0	1.0	2	23	1125	1146	1124	1146	0.96
14	16	0.0019	0.15	12.5	2.3	1	23	1152	1175	1152	1175	0.96
15	16	0.28	22	5.6	3.2	2	23	1182	1203	1181	1203	0.96
16	16	0.0083	0.65	10.4	2.6	1	23	1209	1231	1209	1231	0.98

Sequence Information

Coding Sequence: ATGAATAGGTCAAAGATGCAGCACATTGAAGTTAAAAACAAGGATCATAATTATAGTGAAGTAAAATTACATAATCTTCAGCATACTGCTAGTAATATCCTAAATGTATGTGACAGTGATGTTAAAACAATATGTAAATCAAACAAAACTGGATTAGTATCGAATAAAGAAATATTCGGTCAGATTAAAGATATTAATGAATTAAAAAAAATTACACCACGTGTAAAATTGTTGACTCATGATGCAAATAGTTTAAATGAATTAACTAAAATTTCCTTGCACAATAAAGTATCTGCACAAAAGAAACTACCAATATCAGAACAAACAAAACAGGAATTAAAAAAGTATTGTAGGACTTGTGCTGGTTTGAAACTTCCATTAGTTGATATCTTTAGTGAAAAAGGTAATCAAATGAGATTAAGTCAACAAATTAAACATTTAGAAGAAATAAATCCATATGATAGTTTATCAACTCAAATGTGTATGGATTGTATCTGTGACTTAAAAATGAGTTATAAGTTTTTTATGCAAATTAAAAAGGCAGAAGTTAAATTAAGATCTATTCACATTCACACTCTCACTGATACAGCAACAAAAAATGCAGAATTAAATAAAATGCAGCCTGTAGGAAGTTTTGAGAAACAGATGGAAAATGCTGTTGAGTGTAATACAAAAAATCCATCTACAAGCAGAGAAAATAATGAACATACTTCTGTACCAAAAATATCTGCAACTTCTTCATTAAAAGATAATGAAGATAATGTAAAAGATAAGAAACTTTATGTAGATCATAAAGAATCAGAAACTAAGGTTGAACCTGGAATTTTTGAAGACACCACTGTCTTACAAAACAGTGATGATAATGAATCAATAGAAGAATTTGATCCAGATGATCCTCCTTTTCAACCTGACAGTTCTGATGTTGCAGAGTCTGATGATGAAGTAGAAATACCAAGTGCAAAAAGACGACATATTCAACAGAAAGAAAATACAAAACAATGTTCACAATCAACTATTGTTTCTGATAATAATCCAATTTCAAATAATAAAAATACTGAAATTAACCAAACAACATATAATTATGAATGTCTGAGAACATACATTAAAATAGAGGACACAGAATGTAATAATCAATCTATTGAACCACGTAGCATTAATAATCCTGAAAGTACAAAAGAATGTTCAAAACAACCAAATATATTAAAACGCAGGTTATTATTACAGCCTAAAAAAGAATCTACAGAAGAAACTGATGAAAATATTTACCAGAAAAATATTTCTGATAAATGCCATAAAGATTTAAAAGTACAAAAACTTGGTGTAAACAATTCTTTGAACCTTAACAGTAATCAAGAAGATGGGATCATGTATGTTACTGTGAAAGGATCTAAACCGAATGAAATATTGTTAGTGAAAGTTAAGAAAATGGATAAACCATTAGAGAAGAAAGAAGACAAATCTACAGGGAAAAAGAATTTTGACATTAAACCAATGGATAAGATTTTAAAACGATATGAAACATTAGTTACAAAAGAAAAAGATTTATTTCCAGAACGAACAAAAAAGTTAGAAATAAGAGAGCAGATTATAGAAGAACAAATAGAAGAATACAAGAAAAAGCGAGAAAAAGTATTAGGTGGACATGTCAATATTGTTGCACCTCCAAAATTTGAGGAATCTCGTTACTTTAACCGTAATGAAAGTCAAGATAATCAAAAATGTTTTACACATATAGAAAATGATTCTGCTGTAAACATGCAGTTTAATAAAGATGATAGTGAATTTAATACAACTATTAAAATTGAAGATGATGCTTTAGAAATTGCAGAATCAGCCAAAGAAAAGACTACAAGTGAAAAAACATATGTAAATACTGAAGAATATTTATCACGTTTAGCAAAGCTTAAATTGAAATGGGAAGAAGCAAAAAAGAAGAAAGAGTCTCTTCAAAAAGAACTTGATGAATCTTATACAGAAGGAAATATTGAAAAGTTAGCAAGAATTTTAGGGGAAAAAGAAAAAAATTTGCAAGACTTTCAAGATTATTTAAAACAACGTAAAATTGTAATTACAAGATTAAAAGATGAGGATATTATTTCGCTTTATGAAGACAGGAATAATGCAGTGCTTAAAAACAACTTACCTGACTTAATAGATGAAAGTCAACCAGTAGATTATATTCCAGAAGAACATTATTTAGAATGTGATTATTGTCCAGAAACATTTGCTTCTAAAGACATTCTTGAAGAACATTTGAAATTACATGACTATAAAATTATGCATTTTTGTGAAGATTGCATGGAAGAATTTCCAACAAATAAAGCAAAACGAAATCATAGTGTGATTTGTATAAAAAAATTACTATGTAAATATTGTGACATGATGTTAGATTCAAAAGGAAAAAAGCGTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAATTATGTGATGTATGTGGTGAAAAGTTTAAACATCAAGGAACATTGGATCAACATGTAAAAACACAACACATGAGTTGGGAGAAAATATATCAATGTCCAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTTAGTTTTCATTTGAAATCTGTACACACAACTTTAAGAGCCTATTTGTGTGAGGACTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTTAGACATCATAGAATACGTAAACATCAACCTGTAGGTAATAAGAGAGAATGCCCAGTTTGCCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGTCCACACTGTGACAAAATGTTTAAAAATAGTTCAACTTTAAAGCAACATGTAAGAATTCATGAAGATCAACGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGAAGAGATGGTTTAAGGTTACACATGAAAGTACATGAGAAGACCGATAGTAGAGGATTAAAAGAATGTTCATGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAACACTTGTTATACATAGGAACCGAGTTCATAAGGATGGTAGACAGTACACTTGTCATATATGTAATAGGTCAATGATTTCATCTAGATCATTAGAGTGGCATATGTCTCATATACACAATGAATTGCTTCCTGGTATTGTAAAGGAAGAGATGGATGGATCACTAGAAAAAAGGAGGGCATCGTGTTATCATTGTAATAAGACATTCAAAACAGAAATGATTTTGAGAACGCATATTAAAAACACACATATGGAGAAAGATCCTATGAAATGTTTAGATTGTGAATTAACATTTACTTCCGAAGTGAGGTTAAGACATCATATGATGGTCACACATAACAGATTAGAAGGAACTTTACCATGCCCACATTGTCCAAAGAGGTTCGTGAATCAACTCAGATTAAAAACTCATATGATATCTCATTCTGAAGAAAGACCATACACTTGTGAAGTCTGTGGGTTCAATTTGAAAACTAAGATACAGTTGATTAAACATCATCAAAATAGGCATAGCGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCACTTGTATGTCATGAAAGAACTCATACAAATGAACGACCATATTCTTGTAGTGTGTGTAGGCAACGTTTTAAATATTTAGGTGATAAAAATAAACATGAAAGAAGACACGAAAGCTTAGGAGGATCTGGATTTAAAAGGATAGTGCTTGGTCGAAATATTAAAGGTAAAGTATTAGAAGATTCTTCTTGCTCTGAACACGAAAGTTTAAATAATATAGAGCGTCAAATTCCTGAAAGTGAATATCAAGAACAGACAGATCAGCAATTCGAAGAGGAACAAATAGTTAAATTTGAAGAAGAACAGATTAAATTTGAAGAACAAGAAATAACAGAAGAATATGAACAGGTATATGAACAGGAATATGAAGAGACATCCAGAGAAGCTTCAGATGCAGCAGAAGTTATAATGAATATGGAAGATACAACAGTTTACACAGAAGAAGTAACTGCAGATAACATTGAACCTACAGAAATTATGGCAGATGAAATAATGACAAATGAAATATTACAATCAGGTGCTGTAGTTCACTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTATCCGATGCAAATACAGAGGTCAATTTAGCTACTGCATCCATTATGTATAATAATTGA
Protein Sequence: MNRSKMQHIEVKNKDHNYSEVKLHNLQHTASNILNVCDSDVKTICKSNKTGLVSNKEIFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKVSAQKKLPISEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIKHLEEINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLRSIHIHTLTDTATKNAELNKMQPVGSFEKQMENAVECNTKNPSTSRENNEHTSVPKISATSSLKDNEDNVKDKKLYVDHKESETKVEPGIFEDTTVLQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPSAKRRHIQQKENTKQCSQSTIVSDNNPISNNKNTEINQTTYNYECLRTYIKIEDTECNNQSIEPRSINNPESTKECSKQPNILKRRLLLQPKKESTEETDENIYQKNISDKCHKDLKVQKLGVNNSLNLNSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKEDKSTGKKNFDIKPMDKILKRYETLVTKEKDLFPERTKKLEIREQIIEEQIEEYKKKREKVLGGHVNIVAPPKFEESRYFNRNESQDNQKCFTHIENDSAVNMQFNKDDSEFNTTIKIEDDALEIAESAKEKTTSEKTYVNTEEYLSRLAKLKLKWEEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPVDYIPEEHYLECDYCPETFASKDILEEHLKLHDYKIMHFCEDCMEEFPTNKAKRNHSVICIKKLLCKYCDMMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISSRSLEWHMSHIHNELLPGIVKEEMDGSLEKRRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEVCGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNIKGKVLEDSSCSEHESLNNIERQIPESEYQEQTDQQFEEEQIVKFEEEQIKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPTEIMADEIMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_00220747;
80% Identity: -