Bvos006976.1
Basic Information
- Insect
- Bombus vosnesenskii
- Gene Symbol
- -
- Assembly
- GCA_011952255.1
- Location
- NW:1082383-1092933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-13 1e-09 37.2 0.0 1 39 563 602 563 606 0.90 2 4 2.7e-12 4.1e-09 35.3 0.1 2 39 618 655 617 658 0.94 3 4 7.7e-19 1.2e-15 56.2 0.0 2 45 673 717 672 717 0.97 4 4 8.7e-19 1.3e-15 56.1 0.1 1 42 724 766 724 767 0.97
Sequence Information
- Coding Sequence
- ATGCCGTGCGCCCTCAGCACGGAGCGCCGAATGCCATTTCACTTTCGTTGGGCTTCGCCGCGTAGGAGATCGGGCCCTGCCAGGAATTATCCTCTCGTTCTACGTGGTCGTAACCTCCTCGTACACGGTTTCGTCTGGCTTTTTCACGACGTCGACTCTACTAACGCTGATATCACCTCGTTTTCTCGTCGTGACTTCTGCGccgctttttcttcttcttcttcttcctcctcctccccCTGCTCCTCCTCCTCCCCCTCCTCCTTCTGCAactcctcctcctcttcctttcctttttatttttcccctttttcttcttctcatTCTTCACCTTCTCCGCCTCTTCCTCCTCcacctcttcttcttccttctctttcatCTCCTCATCCTATTACCCTTTCTCctgtatctttttcttttccacttCCTTCGTCTTTCTCTTCtatctctttctccttctcttcttccttcaCTACCTGTTCCTCATTCTCTAGCTTATCGTCCActttctcttcctcctctCCTTCTTCCGTTCTTTCATCTTTCTGTTCGTTCTCTATTTATCTTTCgctttgtttcttcttttctttctttctcttctttcttccctgtCATAGTTACTCGTTCCATCGTTTATTCTCCATCCATTCGTCCaatttttcccatttttctctctttcctcgcTTCGTTTTCCATTTCATCCTGTTTTGTCTTTACCGTCCTCCTTCTGTGTACATCTTTACATTTTCAACGAGGGATCGTTCGTCTACGGAATATCGCAGTCAGTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTATAAGAGGCCCAGAACCACGTTCGAGCCTCGCGCTACGGATTCGAGGCATTACGATCgatacaaagaagaggaatcGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGCAGCAGTAACAATAGTACCACTACTGGCACCAccaataataacaataacaacaacaacaacaacaacaacaataataacaacGCTAGCAGCAACGGCAACGGTAACAATACGAgcaacaacaataacaacggtGACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACGATTACACATTTAAGGGACTCGGATCATCATTCCACAGAGATCCAAAATTGTGACAGTGTAAAGATCAAGTTTGAAACATTGCACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGCTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGACACTCCAAAAAAAGACGGACCTACTAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGTTAGAAGCGTTACGGACTGGAACGATATCGGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCTGCGCCATTCAACGCAAGTCCCACGACGTGGTCGCCCGCCGATCTAGATCGCGCCCTCGAAGCGATACGTTCTGGTCAAACGTCAGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGAACATTATATGGTCGATGCAAAAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTAGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTACAACTTGCCCTACTCTTCCTTATACGGTCGCTTCAAAAGAGGAAAATACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MPCALSTERRMPFHFRWASPRRRSGPARNYPLVLRGRNLLVHGFVWLFHDVDSTNADITSFSRRDFCAAFSSSSSSSSSPCSSSSPSSFCNSSSSSFPFYFSPFSSSHSSPSPPLPPPPLLLPSLSSPHPITLSPVSFSFPLPSSFSSISFSFSSSFTTCSSFSSLSSTFSSSSPSSVLSSFCSFSIYLSLCFFFSFFLFFLPCHSYSFHRLFSIHSSNFSHFSLFPRFVFHFILFCLYRPPSVYIFTFSTRDRSSTEYRSQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRSSNNSTTTGTTNNNNNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- -
- 80% Identity
- -