Basic Information

Gene Symbol
ARID5B
Assembly
GCA_011952255.1
Location
NW:878380-1050664[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.2e-24 1.6e-20 72.5 0.0 1 89 314 400 314 400 0.95

Sequence Information

Coding Sequence
atggaaaagatAGAGTTGTTGGGCGGTGCTTGCTTCAGCCACGGTCCGTACACGTTCTATAAAGCAGTTCGAATAGGAAACGGTCGTGTACTTCGTCTTGGAAGCTTCTTCCTCACGAAATTGTGGAGCGATGCAGATCTCGTCAGCATCGGGGAACTTCAGTTGCTGTGGATGGACAGCAGGGGACCGAATCAACCTCTGGCATCTTTACGGCTGTACTTTTTACCGGAGAACACCCCGGATGGCCGAAGGGACACGCACGGAGAGGACGAAGTGCTGACGATATCGGAAAAGGTGGTCGTGCGGGTTCACGATCTCGTCACCTGGTTATCGCCTACGTTGGAATGGTCGTGGGGTCGCGAGGTGTCTTATCCACCGTCCCCGACGTCATCTCCGGCGAACAGTCCGCTAAGATATGAAATACCACAACCTCAGGTGCTCACCGATCCTGGCATCGATTTCTCAGATGTCGATAAGCAACAGAAGGAATACGAAAGCAATCACAACACAAGGAAATCGGATTGTATTTCTCAAACGAAAGTGGTCGTGCTCTCGTACCCCAGGTACTGTCGATATCGAGCACTGTTGCGTAGGCTCGAAGGTGCCGAACCGTCTTGGCTTTGCTCGTCCATAGCAGCTGCACTAGGTGGATTCACCGCCACACCAGGTACGAGGGTACTCTTCTGCAGAGATACCTTCGACTACCCGGACCTTGAAACTCATGAGCTCCTCTGCAATCACCTAGCGCCGAAATTGAAAGGAAGACCGAGAAGGAAGCGTAAAAAGCGTAGCGCATCGCCAGGAGAATCGAGCAACGAGAGCGAGGCATCCGTGGCGTCTACCTCGAAGAGTGCCCCAGCGAGTTCGAACGTGGTGGTACCGAGCGTTGGAAGGCCACCTTCGTCGGTAGTACGACGAAGCGAGCGAAAGACCACCGCCGAGGAAAAGAAATTCCTAACGGATGTGCAGAATTTCATGAACTCGCGGGGTACGCCTGTCGGAAAGATGCCACTGCTGGGCTACAGACAGATCGATCTCTTCctattttatacgaaagtgCAATTGCTCGGTGGCTACGATTCCGTCAGTGCTGGTCGACTCTGGAAGAACATTTACGACGACATAGGTGGTAATACAGGATCCACCAGCGCTGCGACTATCACTCGACGGCATTACGAAAGGTTGCTGTTACCCTATGAGAGGTATCAAAGAGGAGAGGAAGCGAAAGTTAGACTAACACCCGGAAGGCGAAGTAAGAGTAGCAGCGTGTCCGAGGAGTCCGAAGATAATAAGCAAGAGACGAACGATTCATATCCATCGGAAACGCCTCCCCCTGTAGAAACGAATGTTACTGCTACAACTCCTCCCCTTCAATCAATTGTATCGTCGGCAGCAcCGTTCCTTTCGAGTGAAAAACCGAAGACGGAGACGGGCAAAACATCGTCTCTGCGTAGCGTACGAGTGAAACAAGAACGCTTGAAATCGTTAAATACTATGATTGCCAATAGCACGCCATCGCCCAGCCAGCAAACAAGCCAATTACCAAGTCCACCACCTTCTTCTAATACGTCAATTTCAACGCCGAGTAGTACACCTTCTACGACACCCACGAATGGTACTGGAAGTCAAAGTGTATTAGAGAGGCAGCTCAACAGTCCTCTGATATCGCAACAAGTTCCACCGTCGTGTTCACCGCCGGGTCTTCCGGTAACTACAGTGGTAACGAATGCTTCTACGGTGGTAACATTAACACCACCGCCGGAGAAAGATATGAAAGAAATCAAACTAGATCCTAAACAAACCACCCTGTTGGCGCAGGGTAAGGAGAACATACCGTTGTTCGGCGAGAAGTCAATTTTCGCGGAGAAGACGATAGTGCCTCCTAGATCACCAGAAGTGATTGACCTGGAAACGGAGAGTGACACGAGTAGGGATAAGATAATCATTCCCAGTTTTAAGAAACGTAAATTGGAAATACTTCGCGAGGGTGGTCTTGAAGTTACTGCCGTTGACTTGGATACGCGACCCAGCGTGATTCAAAGCAATCCTCCTGCGCCAGCAACAATGAAATCCGAAGAAAAGCCGCCAATATCGTATCCTCTTCCAGTCACACCTAATTCCATTCCTAAGTTGATTTCCGTCACCGTAACGCCGGACATAGGACATATGTTATCGTCTCCTCAAGagcatcatcatcatcatcaagCACGGTTACAAACGCCGACCAAGCAACATCCCGCTCAtcataataacaataataatattatgatgaataataataatatggtgAACAGCCGCGTAATAAATCTTGGTACTTCTAATAACGCCGCGTTGCTACAATTGTACGCGAATGCTAATGTCCCGCCACCAGCGTCGTCAGGGTTGCATCAGGCAAATCATCGTTTCGTACCGCCAATTGTTCCTAACGGTAGGATATTTCCGCCCAAGGTGACACAGTCAAAGTCGATATTCGCACACAACGAAAAAATGGTTTACGGAGATCCGAAAGAGATTCCTATCCCTCCAAAGTATCGTCCCACGCTGCATCGTTTGCAGCCGCATCAGATACACAATAATAACGACCCTGTGTACAGCGGGGTCCTCGACTTAACACAAAAATCGAACAAGCCGGTGTTTCCGAGGCCGAGCTTAGAAATAGTGAAAGTACCTGTAGTGCCGAGGCCTAATCCATTAAACTTGGAGATGAGGAACTCGTCGATTAAAGAGAAACCAACAGATTGTTCGAAACGAAGTACCTTCCCTGGTTACCAGAACGTACTGGACAGTCGAACGATGGCTTCGAATAACTTAGAAATTACGATCGTAAACCCTAAGCAAAAAAATAATCACTTAAGTACACCGACGCATGTTCGAGTATCGAGTCCATCTAGAAATAGCGCGATACCTGTGCAAAGAAGGCAACACCTGAATGGCAAGTACACGACGAGGAGTGAACCAGTTTCACCGTACACACCTAGGAAGCCGAGTCATCCTGTTATACCGAATGTACCTAATCTAAATCACCTGAATAGTGGAAATTATCCTAGAATGGCAACGATTCAGCAACAGAATACGATCGATAGGAGAAAAAACGTAGAAATGAGCGGTGGTAAGGAGCAGCATCAGCATCAGCATCAGCAGCATTCACTTCAACATCAGCATCATCACCAGCACCAACATATGCATCAGCAACATCAACAGCGTCGAATCAGCGAGGGCGATAAATCGTTAATCGCtcaacaacaacagcaacaacaacaacaccAGCCACAGGAACCGAGGCAAACCGAAGCTGGAAGACGACACAGTGTTCCGAGTATACCTTCTGGTTATGTACCTACGGTACCGCAAAACAATCCAGCTTTCTTTCCACAACTGCCAAACACGCCCGGCAAGTTCCTACCGATTTTAGATCCCATGTACTATTCCGCATTCTATAATGGTTTATTTCCCCCGCCGATTCCGCCCACGGCTGCCACGTCGTTTTTACCGCCGGAATTTAGTGCGTACTACAAAGAATTACTTGCTTCCTCGCAACCAAGACTGGGGATGGCGGGGCAGCATCAGCCAGCTGCTCCAACGTCTAAGTAG
Protein Sequence
MEKIELLGGACFSHGPYTFYKAVRIGNGRVLRLGSFFLTKLWSDADLVSIGELQLLWMDSRGPNQPLASLRLYFLPENTPDGRRDTHGEDEVLTISEKVVVRVHDLVTWLSPTLEWSWGREVSYPPSPTSSPANSPLRYEIPQPQVLTDPGIDFSDVDKQQKEYESNHNTRKSDCISQTKVVVLSYPRYCRYRALLRRLEGAEPSWLCSSIAAALGGFTATPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSASPGESSNESEASVASTSKSAPASSNVVVPSVGRPPSSVVRRSERKTTAEEKKFLTDVQNFMNSRGTPVGKMPLLGYRQIDLFLFYTKVQLLGGYDSVSAGRLWKNIYDDIGGNTGSTSAATITRRHYERLLLPYERYQRGEEAKVRLTPGRRSKSSSVSEESEDNKQETNDSYPSETPPPVETNVTATTPPLQSIVSSAAPFLSSEKPKTETGKTSSLRSVRVKQERLKSLNTMIANSTPSPSQQTSQLPSPPPSSNTSISTPSSTPSTTPTNGTGSQSVLERQLNSPLISQQVPPSCSPPGLPVTTVVTNASTVVTLTPPPEKDMKEIKLDPKQTTLLAQGKENIPLFGEKSIFAEKTIVPPRSPEVIDLETESDTSRDKIIIPSFKKRKLEILREGGLEVTAVDLDTRPSVIQSNPPAPATMKSEEKPPISYPLPVTPNSIPKLISVTVTPDIGHMLSSPQEHHHHHQARLQTPTKQHPAHHNNNNNIMMNNNNMVNSRVINLGTSNNAALLQLYANANVPPPASSGLHQANHRFVPPIVPNGRIFPPKVTQSKSIFAHNEKMVYGDPKEIPIPPKYRPTLHRLQPHQIHNNNDPVYSGVLDLTQKSNKPVFPRPSLEIVKVPVVPRPNPLNLEMRNSSIKEKPTDCSKRSTFPGYQNVLDSRTMASNNLEITIVNPKQKNNHLSTPTHVRVSSPSRNSAIPVQRRQHLNGKYTTRSEPVSPYTPRKPSHPVIPNVPNLNHLNSGNYPRMATIQQQNTIDRRKNVEMSGGKEQHQHQHQQHSLQHQHHHQHQHMHQQHQQRRISEGDKSLIAQQQQQQQQHQPQEPRQTEAGRRHSVPSIPSGYVPTVPQNNPAFFPQLPNTPGKFLPILDPMYYSAFYNGLFPPPIPPTAATSFLPPEFSAYYKELLASSQPRLGMAGQHQPAAPTSK