Basic Information

Insect: Bombus vancouverensis
Gene Symbol: ZNF236
Assembly: GCA_011952275.1
Location: NW:6784775-6795587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0015 0.095 12.5 0.8 2 23 174 195 173 195 0.95

2 26 8.3e-05 0.0053 16.5 1.1 1 23 201 223 201 223 0.98

3 26 2.5e-06 0.00016 21.2 0.4 2 23 229 250 229 250 0.97

4 26 0.0065 0.42 10.5 0.3 3 23 258 278 256 278 0.96

5 26 5.3e-05 0.0034 17.0 0.9 2 23 289 310 289 310 0.98

6 26 5.9e-07 3.7e-05 23.2 1.1 1 23 331 353 331 353 0.99

7 26 2.3e-06 0.00015 21.4 0.8 1 20 359 378 359 381 0.95

8 26 2.2e-05 0.0014 18.3 0.7 1 23 387 410 387 410 0.95

9 26 0.0021 0.13 12.0 2.2 3 23 421 442 419 442 0.97

10 26 1.5e-06 9.4e-05 21.9 2.1 1 23 565 587 565 587 0.98

11 26 0.00025 0.016 14.9 3.3 1 23 593 615 593 615 0.99

12 26 0.038 2.4 8.1 1.6 1 23 621 643 621 643 0.97

13 26 0.0022 0.14 12.0 6.7 1 23 734 756 734 756 0.98

14 26 2.7e-05 0.0017 18.0 5.1 1 23 762 784 762 784 0.99

15 26 0.00021 0.013 15.2 1.0 3 23 792 812 790 812 0.97

16 26 0.00032 0.02 14.6 7.6 1 23 818 840 818 840 0.98

17 26 1.9 1.2e+02 2.7 1.3 2 23 1238 1259 1237 1259 0.94

18 26 0.00055 0.035 13.9 1.3 1 23 1265 1287 1265 1287 0.98

19 26 0.0056 0.35 10.7 1.6 1 23 1293 1315 1293 1315 0.98

20 26 8.2e-08 5.2e-06 25.9 1.4 2 23 1394 1415 1393 1415 0.98

21 26 0.00058 0.037 13.8 3.5 1 23 1421 1443 1421 1443 0.99

22 26 7.5e-05 0.0047 16.6 1.9 1 23 1449 1471 1449 1471 0.98

23 26 0.0003 0.019 14.7 2.5 1 23 1477 1499 1477 1499 0.98

24 26 7.2e-06 0.00046 19.8 0.4 2 23 1724 1745 1723 1745 0.97

25 26 1.1e-05 0.00067 19.3 4.5 1 23 1751 1773 1751 1773 0.98

26 26 2.1e-06 0.00014 21.4 1.1 1 23 1779 1802 1779 1802 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0015	0.095	12.5	0.8	2	23	174	195	173	195	0.95
2	26	8.3e-05	0.0053	16.5	1.1	1	23	201	223	201	223	0.98
3	26	2.5e-06	0.00016	21.2	0.4	2	23	229	250	229	250	0.97
4	26	0.0065	0.42	10.5	0.3	3	23	258	278	256	278	0.96
5	26	5.3e-05	0.0034	17.0	0.9	2	23	289	310	289	310	0.98
6	26	5.9e-07	3.7e-05	23.2	1.1	1	23	331	353	331	353	0.99
7	26	2.3e-06	0.00015	21.4	0.8	1	20	359	378	359	381	0.95
8	26	2.2e-05	0.0014	18.3	0.7	1	23	387	410	387	410	0.95
9	26	0.0021	0.13	12.0	2.2	3	23	421	442	419	442	0.97
10	26	1.5e-06	9.4e-05	21.9	2.1	1	23	565	587	565	587	0.98
11	26	0.00025	0.016	14.9	3.3	1	23	593	615	593	615	0.99
12	26	0.038	2.4	8.1	1.6	1	23	621	643	621	643	0.97
13	26	0.0022	0.14	12.0	6.7	1	23	734	756	734	756	0.98
14	26	2.7e-05	0.0017	18.0	5.1	1	23	762	784	762	784	0.99
15	26	0.00021	0.013	15.2	1.0	3	23	792	812	790	812	0.97
16	26	0.00032	0.02	14.6	7.6	1	23	818	840	818	840	0.98
17	26	1.9	1.2e+02	2.7	1.3	2	23	1238	1259	1237	1259	0.94
18	26	0.00055	0.035	13.9	1.3	1	23	1265	1287	1265	1287	0.98
19	26	0.0056	0.35	10.7	1.6	1	23	1293	1315	1293	1315	0.98
20	26	8.2e-08	5.2e-06	25.9	1.4	2	23	1394	1415	1393	1415	0.98
21	26	0.00058	0.037	13.8	3.5	1	23	1421	1443	1421	1443	0.99
22	26	7.5e-05	0.0047	16.6	1.9	1	23	1449	1471	1449	1471	0.98
23	26	0.0003	0.019	14.7	2.5	1	23	1477	1499	1477	1499	0.98
24	26	7.2e-06	0.00046	19.8	0.4	2	23	1724	1745	1723	1745	0.97
25	26	1.1e-05	0.00067	19.3	4.5	1	23	1751	1773	1751	1773	0.98
26	26	2.1e-06	0.00014	21.4	1.1	1	23	1779	1802	1779	1802	0.97

Sequence Information

Coding Sequence: atGTTGACGCGACACAGTGTAGTTACAGAATCACCTTCACATGTCGATACAATACCTATAAATCTCGTTGCTACTGAGGATGGCCGAACGCTTTTAGCAGTAACTGAACATAAAGACGGTATGTTGGAAATTGTTGCAACTCCAGTTATGCTTGTTGGACAAAGTGAAGCAGTATCGCCGCTAGTAGatgtaaaaaattttaatggaaATCTAATATTACATTCGCCTGTTTTTCAAATAAGCGTTGAAAATATTGTCAATGAGTCAGAACTTCAGCAATCAACACAAAATTTTGAGACTGAGCCTAATAGCATTGATCAAATACCATCATGCAGAGAATTAACATGCAAGGAAACAGTTACGCAAGAATATCAGTCTCTTTCTTCGAATGATTCAGTAGCTAGCGAAAAGGATGGAAAAATTTGTAAACAGAAGCCAATTAATACATCTGTGAAAAAAAATAGCCCTGGAAGGCCCAAGAAAAACAAAGCAATTTCTTTGCAAGACACAGATAGTTTAATATGCGATATTTGCCATCAAGAATTTGGTAAACAAGCATTATATCGGAAACATATGGAAAATCATGCAGAAGAAAAACCACATCGATGTCCAAAATGTTCTGCATCGTTCAACGTGCCGACAAATTTTACACTTCACATGGCAACGCATAATACAGGTGAACCGAAATGTCCAGAATGTGGGAAAAAATTTGCAAGAATGGCTAGCTTAAAGTCTCATATGTTGTTacatgaaaaagaagaaaacttaTTCTGTACAGAATGCGAAGATGCTTTCTCGACAAAGACTCAATTAGATGCACATTTAAAGCTACATGGGGAAAAGTGGACGATTGAAGAAGTacgaaaatgtaaattatgtaataaaCAGTTCAGTCAACCCGCCTTATATAGACTTCATATTCGTGAGCACTATAGGTTGCAGACAAAAGTAGTAAAACAAACGAAAAGAGGGACAAAACACAAAACAATGTATAAGTGTACCATATGTTTGAAGTCTTTTCAAAAGCCAAGTCAATTGATGCGGCATATTAGAGTGCATACTGGTGAAAAACCTTTCAAAtGTACAGACTGCGGTCGTGCATTCACGCAAAAGAGTTCGCTGCAAATTCATACGTGGCAACACAATGGTATTCGACCTCATGCTTGTGAGTTTTGCAATGCCAAGTTTAGTCAGAAAGGTAATTTGAATGCTCATATAATGAGAGTTCACAATGTCCCAGAGGGAGAACCTATATACGGATGTAATTATTGTTCATGCGTGTTTAAAAAACTCGGCAGTTTGAATGGTCACATGAAACGTATGCATACCGATGTAAACGAGGAGAATAGCATTAATGACAATACTCATTCGAGTAATACCATGGAGTCTGATATACGTTCAACAGTTGATAGTGTTATAACACAACTGGCATCTTTAGAATCCGACATTCATCAGACTACAGAATCGTCAAATTTCGAACCGCGTTTATTATCGGAAAACGTAACGAAAAAGGATATTTTACAACAAGCATTGAAAAACAGTGGTCTTcctagtaaaaataaaattgcttcTGAAGAGATAAAGAAGTTTGGAGCTCGTGTTAATTTTGTAACATTATTGGATCGAGCGCCTGATGGTGATACGAGaaaatatttgacaataaAACAACGATGCGTAGGAAACGTGAGATGGTACGCGTGTACATTTTGTCACAAAGAATTCAAAAAACCATCAGATTTGATACGCCATTTGCGTGTTCATACGCAAGAAAAGCCTTTTAAGTGCACCCACTGTTATCGTTCGTTCGCTTTGAAATCTACTATGATAGCACACGAACGTACGCATTCAAGTGTTAAACGTTATGCTTGTGGTTCCTGCGAGAAAGCATTCGTATGCCATAGTAGTTTAATTGCACATACTAGATTGCATGCAAAGTCCGAAaattgttcaaataaaaccACTGACAATGATAAGGATTCCGACACATATGCAGTAATTGATGCTGACATTTATCCCACTGATCAATCGAAAAATCAAATAAAgggtaaattaaaattatcacCGGAAGCAGAAAGCTTGGTTCCTCAAGTTATCTTGCAAGAACCGTTGGTAATTAGTGATacaggaaataaaatttccgtGGTATCTTCGGGAAAGGAAAAACGTGCTTATGATACATCTACTGATCATGCTAGACCCCACAAATGTTGGATTTGTCAGGCGGCATTTAGAAAGATCAGTCACTTGAAGCAACATCATCGCCGCCACACTGGAGAACGTCCATATAAATGCACAAAATGCGATAGgAGATTTACATCGAATAGTGTTCTAAAATCGCATTTGCATACTCACGAAGATTCGAGACCATACGGTTGTTCTCTTTGTAATGCGAAATTTTCTACACAAAGCAGCATGAAAAGACACTTGGTTACTCACAGTAATAAAAGACCGTTCATGTGCCCTTATTGTCACAAGACTTTCAAAACTTACGTCAATTGTCGGAAACACATGAAAATACATAAGCATGAACTGGCACAACGGCAATTGGAACAACAGAAAATCAGAATACAAGAACAAGCTTCAGACAAGTCAAATATGAAGGAAAGTTCTAAACAAGAAGCGGCTCTTGAATcgtcttcctcctcttctgcCTCTATCACTACAATTAATTCCACTATTACCAGCAACATCTCCGTCACTACCACTGCCACTACCAGTACCACCCCTACCACCGTCACAACTTCCTCTTCTACGTTTTCAGATAATCTTGCACTTTCTCGTCTTGGATCGGTTGAATTATCATTTCAATCACAGCTCGGATCAGAGCTTTCACAAGCTTTTCCCGAGTTTCAAAATATAActgaaggaaaggaaaaaataagacCAGTTTTAGCAACAAATTGCGATACTACAACGTTTATTAATCaaAATGTAGCGGGAATAGCTGTAACAAATCTTGAAAATTCACCAATATTACAAGCTGATGAAGCTGGTTCAGTCACGTTGCCCGTTTACTCTGGCGATCAGACACTTACACCGGAAAGTATACGAGAAATAGAAGAAACTTTAAATCAACAGTTTTTTAATATCGGGATGAATCTTAACTTGGGAGGTAATCACTCGAGACATTCGAGTAGTACAAACACGAGTGATTTTAGTCATATGAAAGAGCAACAGCAACCTGTATTGAATgttatatatgaaaataataataacagtaACTGTAATAGTAACGTAGAATCAGCTGGAGAACATGTATTTTCGACGCAATTAGATTCATTTGAGATGGACCATATTACTTTGCAATCGGATACTGAAATTGACATTGGACTAGATACAAGAAATTCAACTAGTATGGCGAGTATACTACCTAGAAATGTAAAAGATGAACATCGTCTTTCTGTTTGTGTTACAACACCAGATAACATAAATGTTGAACAATCAGAAAAGTCTGGTGTGCAAACGGTTGTATTTGTTTCCCAGCCAAACTTCTCCAAAAAAGAGAATATAACAAATGAATTTACTGTAGAAGAAACCCAGAAGAACAGTATTCACAAACAATGTATAATCAACCCGATATTCTTTACAGAAGACTTTCGGGGAACATCACAAGATTTCAAGATTCAGTCAAATATGCACGCTTTGTCATCCGATGTTCCAGAAATCGTTAAAACCGCTACGGGCAAAATATCCCGTGGACAATCTCTATTACAGTGTCACATGTGTAGCCAACAAGGATTCACGACAGTTGGTTTAAAGGAACATTTGACAAGCCATCGCGGAACGAAGGAATATCAGTGCACAGAGTGCTCTTCTAAATTTTACACAAATGGTGGATTAAATAGACATTCGAAGATTCATGTCGTCAAGCAACCATTTAAATGTTTATCGTGTGAGAAGCAGTTTAACAATAGGATCCAATTACTATCACATAGTAAAATTCATGAAACTTCAATATGGAATGCTTCAGGGATGAATGATAATTCAGATAATTCGACGTTTTTATCGGAAGTGCATCAACCGCGGATTGCAAATGATCATTCACCattacataatattatgataGAACCCGATTCTGCCGTTTCTGAGAAAGTTCTGTTGGATACAGTAGCTGAAAAAGAAGTAATGGATCAAGTAGAAATTTTGTTGGAAAAGAAGGAACGAAAAGAGTATACAAACAAATGTAAATATTGTCCGAAAACTTTTCGCAAGCCAAGCGATCTTATAAGACATGTACGCACACACACAGGAGAACGACCATACAAGTGCGATTATTGCAGTAAAAGTTTTGCCGTAAAATGTACTTTGGATTCTCATACAAAAGTTCATACGGGAAAAAAGACATTTCGCTGCCATGTGTGCAATAGTTTATTTGCGACTAAAGGTAGCTTGAAAGTTCACATGCGTTTACATACCGGTTCGAAACCATTTAGATGCCCTATATGCGATTCGAGATTTCGAACATCCGGCCATAGGAAAGTACACTTATTGAAACATGCACGCGAACACAAAGATAATCCAAAGAGAAAACAAAGACATTTGAAGGTTGCAGTCATAGCTGAAGTAGCGACTGATCTTGAGAAATGTGAcggaaaggaagagaaaatgaataattttgaGCCAAAGCAGCAAATAGCACAGGAGCAGCAGCTATCACAGGCAGTTGCAGGATTAACGTCCCATTTAGAGGCATATAGTATTGAAACAGCTGCTTCCTGTTTATCTGatcaaattaatttcgatACAGAAGGTATCGTATCGAACAACAATCAAACGATAGTGTCCATAAACGAAAACAATCAGTTAGTTACGAATTTACACTTTCTTCTGACAAATGGTCTTGTTACTATACAAACCGAAGAATCGTTGTTATCACAATCATCTGCATCACCAGCTAACAATTCGCAGCATCGACCGGCTGGGGTTCCCGATACTGGGTGTGCACTAACAACACCCAGCGTCGTATCTGATACTAACGAACAACATGCCAAGGATGAAATTCATATAGAACAAATGTTAAAAACGCCAGCAAATAATTGTCTTTTAGCGATATCAACCGTGACACCTTCATTGGAACGACAGCTGGAACCATTTTCAAAGGTGATTACGGAAGAAACGTTACCAGTAGTAGCCAATAAACCGACGATTAAAGGGAATCCATCGAAAAAGGAATGCGATATTTGTGggaaaatatttacaaaaccGTATCAAGTCGAAAGACATAAACGAATTCATACGGGTGAACGGCCATACAAGTGTGATCTATGTACGAAATCATTTGCCCAAAAGTCAACTCTACAGATGCATCAAAAACACCACACTGGCGATCGACCCTACGCTTGTTCGTACTGTGAATATTCTTTTACGCAAAAAGGCAATCTTCGAACACATGTTAAACGCGTACATCAACTGGATACTGTTGACATCAGGAAATGGAAACGTAGCCGTCAATCCTTCCTACCTAAAACATCTCTTCAGGAAAACACGATCGAAGCTAAGAGTCTAAATTTAGACAACATATCGTTTGTAGAGCTGCTTAAATAG
Protein Sequence: MLTRHSVVTESPSHVDTIPINLVATEDGRTLLAVTEHKDGMLEIVATPVMLVGQSEAVSPLVDVKNFNGNLILHSPVFQISVENIVNESELQQSTQNFETEPNSIDQIPSCRELTCKETVTQEYQSLSSNDSVASEKDGKICKQKPINTSVKKNSPGRPKKNKAISLQDTDSLICDICHQEFGKQALYRKHMENHAEEKPHRCPKCSASFNVPTNFTLHMATHNTGEPKCPECGKKFARMASLKSHMLLHEKEENLFCTECEDAFSTKTQLDAHLKLHGEKWTIEEVRKCKLCNKQFSQPALYRLHIREHYRLQTKVVKQTKRGTKHKTMYKCTICLKSFQKPSQLMRHIRVHTGEKPFKCTDCGRAFTQKSSLQIHTWQHNGIRPHACEFCNAKFSQKGNLNAHIMRVHNVPEGEPIYGCNYCSCVFKKLGSLNGHMKRMHTDVNEENSINDNTHSSNTMESDIRSTVDSVITQLASLESDIHQTTESSNFEPRLLSENVTKKDILQQALKNSGLPSKNKIASEEIKKFGARVNFVTLLDRAPDGDTRKYLTIKQRCVGNVRWYACTFCHKEFKKPSDLIRHLRVHTQEKPFKCTHCYRSFALKSTMIAHERTHSSVKRYACGSCEKAFVCHSSLIAHTRLHAKSENCSNKTTDNDKDSDTYAVIDADIYPTDQSKNQIKGKLKLSPEAESLVPQVILQEPLVISDTGNKISVVSSGKEKRAYDTSTDHARPHKCWICQAAFRKISHLKQHHRRHTGERPYKCTKCDRRFTSNSVLKSHLHTHEDSRPYGCSLCNAKFSTQSSMKRHLVTHSNKRPFMCPYCHKTFKTYVNCRKHMKIHKHELAQRQLEQQKIRIQEQASDKSNMKESSKQEAALESSSSSSASITTINSTITSNISVTTTATTSTTPTTVTTSSSTFSDNLALSRLGSVELSFQSQLGSELSQAFPEFQNITEGKEKIRPVLATNCDTTTFINQNVAGIAVTNLENSPILQADEAGSVTLPVYSGDQTLTPESIREIEETLNQQFFNIGMNLNLGGNHSRHSSSTNTSDFSHMKEQQQPVLNVIYENNNNSNCNSNVESAGEHVFSTQLDSFEMDHITLQSDTEIDIGLDTRNSTSMASILPRNVKDEHRLSVCVTTPDNINVEQSEKSGVQTVVFVSQPNFSKKENITNEFTVEETQKNSIHKQCIINPIFFTEDFRGTSQDFKIQSNMHALSSDVPEIVKTATGKISRGQSLLQCHMCSQQGFTTVGLKEHLTSHRGTKEYQCTECSSKFYTNGGLNRHSKIHVVKQPFKCLSCEKQFNNRIQLLSHSKIHETSIWNASGMNDNSDNSTFLSEVHQPRIANDHSPLHNIMIEPDSAVSEKVLLDTVAEKEVMDQVEILLEKKERKEYTNKCKYCPKTFRKPSDLIRHVRTHTGERPYKCDYCSKSFAVKCTLDSHTKVHTGKKTFRCHVCNSLFATKGSLKVHMRLHTGSKPFRCPICDSRFRTSGHRKVHLLKHAREHKDNPKRKQRHLKVAVIAEVATDLEKCDGKEEKMNNFEPKQQIAQEQQLSQAVAGLTSHLEAYSIETAASCLSDQINFDTEGIVSNNNQTIVSINENNQLVTNLHFLLTNGLVTIQTEESLLSQSSASPANNSQHRPAGVPDTGCALTTPSVVSDTNEQHAKDEIHIEQMLKTPANNCLLAISTVTPSLERQLEPFSKVITEETLPVVANKPTIKGNPSKKECDICGKIFTKPYQVERHKRIHTGERPYKCDLCTKSFAQKSTLQMHQKHHTGDRPYACSYCEYSFTQKGNLRTHVKRVHQLDTVDIRKWKRSRQSFLPKTSLQENTIEAKSLNLDNISFVELLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215155;
90% Identity: iTF_00217878;
80% Identity: -