Btur005781.1
Basic Information
- Insect
- Bombus turneri
- Gene Symbol
- -
- Assembly
- GCA_014825825.1
- Location
- CM026111.1:8493437-8502405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00049 0.044 14.3 1.0 1 23 793 815 793 815 0.97 2 10 0.0092 0.82 10.3 0.1 2 23 906 927 905 927 0.95 3 10 0.045 4 8.2 0.3 3 23 1101 1121 1099 1121 0.95 4 10 0.0019 0.17 12.5 0.3 1 20 1205 1224 1205 1226 0.94 5 10 0.085 7.7 7.3 0.2 1 23 1294 1316 1294 1316 0.97 6 10 5 4.5e+02 1.7 1.2 1 13 1323 1335 1323 1346 0.79 7 10 0.029 2.6 8.7 0.1 1 23 1365 1387 1365 1387 0.96 8 10 0.31 28 5.5 1.5 1 19 1842 1860 1842 1862 0.94 9 10 2.6e-05 0.0023 18.4 0.2 1 23 2033 2056 2033 2056 0.96 10 10 0.74 66 4.3 0.5 1 23 2058 2080 2058 2080 0.95
Sequence Information
- Coding Sequence
- ATGGAAATTTCTAATGAAGAATTATTTTCTTCACGTCATTCGGTTGATAATTATTCAGAGCAAGTAATTAACATGTCATTATCATTACCAAACCCAAAACCTAAAGGTACTAATGCAAAATACAAAAATATCCAAGATACTAGTTATATATTCAGGAAAAGATCAAGAAGTAATAGGTTGAAACAATTGTTAAGAAGAGGAGATACATTAGAGGATTTGTGTAAATTATTGTGTAAGCCAGTTATTGTGAATGTTACAAAATTATCAGTATCAGAGATAAAACAATGGTGTAAAAAAGACTTGCATCAATCTAAAGCAGAAAATATATTAACACAGAAAAAAAAATTTAAACCAAGGATACCACGAACAAGATTCTGTAAAAGGAAGAAAAAGTCCAAGCAGAAGCAGTTATCTTGCTTATGTAATTCTGAAAATGAAGTTAAACCTCAAAATATGTTATTTTCCAAGAAAGCAGAGATTGAAAACAAGAATTGTATAAAAAATTTATTAGAAGATGTTAAACAACCACATATAAAATTACAAAGAATAGATGAAGTAATCAATAAAATAGCACAGTCATTTGCAAGAGTAACTCCGATTAAAGAATGTGAAACAATTATTCAAACAGAATGTGGAACAAATATTCAATCTGAATGCGAAACAAATATTCAAACAAGATGTGAAACAAGTGTTCAAAGAAGATGTGACACAAGTATTCAAACAGAAGAAACTCAAACTGAATTAAGTATACCTGCACCAGAACAACTAAAATTATCATCTGTAAATATCGATACAGATAAATATCAACAAAATCTTAAAACTGTGACAATAGCAATTAGGTCTCATGCAAATGAGACTCTACAATTGAATAAATGTGCAGATTTAGATTCAGATTCAGATTCAGATTCAGATTTTAATACTAATTCTGATTTTAAATCTAATTCTGATTCTGATTCTAATACTGGAAATTCTAGAAATACTAATGAAAGGAGACATAGAATTATATATAATTCTCATACAGATGATAATAATCGTTACAATAAGAGCAATGCTAATAATGCAAGAATAATTTCGAATAAATTAAAGAGGTCAATGAGAAATTCATCAAAAGAAATAAGCAAAATTAACCTAGTAAATGAAAAATACAATATTATTAAGAAAAGATGTACAGATAAAAATTCATTGTTTCAAGCATCACAAAGACCAAGTATATTAGACCGTATATCTGCTCTATGTGATCCTGATGATGATGATGATGAAGGTATTAAAGAAGGTAATACTTCCAGTTGTGTGCCTTCAAAATTAAATCTTGAATGTATTATAAAAGATGGTACTTCTGTAAAAGGAAAGAATGAAGATGCTATGACTATAGAGAAACCAATTGTAGAAAACAATAAGATTAAAGAACAAATACAAGAACCATTTCCTTTCGATAGAAATTTTATACAAAGATATAAATTGTTTAAAGAATTAAAAGTTTTTTTAATAAAATTTGATGCTATGAAAGACTCCAATACTACATATTCAGCAACTGAAATTGAGAAAATGACAGAAAGATTTACGAATTCTTACGTGAATTTAAATTCTTCAAAACTTCAATACAGTAACGAAAAATCTATAAATAATCCATCATTTATTTCAATCTTTTCAAAAGATTCTAATGTTAACATTGAGAAATCTACAGATACTACAAAACATGTTTCAAGCTCAAGTATTGATAGCATTCCAAATAAAAATATTTATACAACTACCAAAAGAGCACAAAGCACAAAATTATTATCAAATTCTTCAGAAAAATTACCTCCAAATTTAATCAGAAATGCAAAGATACAACAAGAGAGAAATTCACAAATTCAAAAAGTTTGTCATAATTTAACAAAAAGTTTTGAAGACAGTTTTAAAAAAAGGTTTGCACAGAATACTATTAGTAATGCAAAGCATAAATTGATTGTTCCAATCCCTACTATCAAATCTACATTATTATATTCTTCACAAAAATCTACCAATAAAAATTTTGAATTATCAAATGTGGTAGAAAACATTGATAATATAGACAAATCTACTGGCAAAACGTTCTCTTTAAAGAAAAAGATACCAGAGATTTCTTCACCTAAGGAGAATTCTATGAAATTGGTTATTGATGCAAGATTTCAAGAACAAGTGGGAGTTGATACATCTGGTGTTACTAATTTCAAATTGCATCTTTCAAAGAAAAATAAAAAACATGAGTCAGAGAAACATACATTTGCACCTAAAACATGTGGAAAAACTACAAATGTTACAACTACTAAAATAGCTACAAAGAAAAGTGCTTCAACTTCTTATTCTTCCATAGTATCTCCTAAAAAACATAAGAGACTTAGAAATAATCATGGTTATAAATGTATTGTTTGTGATCTTTGTTTTGAAGATTATTCTGATTTACAACAACACCTAATTACACATACACAAAAGCAAAATAATAGTTTAGTAAATTCATTGAAAACTTCCAATATGTCACCTGAAAAATCTCAGGACATGATATCTCAATCCTCAAAAGCAAAGATATCAGAACCATCACAAGTGTCAAGTGAGCACAAAAGTGGAGAACATACAGCATCACAATATGTCACCAAGAAAGATAATGGACAACAAAAGAAAAAAGATGCTATAACAAAAAGCTCACTGAGTAAAGAAAAGAGGAAAAGGAGGATTAAGCGTATTAGTAATTCAAATAAGTGTAGTATTTGTTCAAAATCTTTTGAAGCAATGGCTGATTTGGCAGCTCATATCTTCTTACATACAGAGAAAGAATTGCAACAAGCATATAAACTCGCAAAAAAAAAATTGAATGGAACAGAAAAATATAAACAAACTAGAACTGAACAAACAGCTAATAGTATTAAAAATGTAAATAGCACTGTAAATATTGCAGATAATATAGTTGAAAGGATTCAAAAAGTTAATGATAAGGAAAAAACATTGTTTATACAGAAACCAAATAAATCATTAATTACAGAAGATTCAGAAATTAGAGACACAGAATCTATTACTATGAAAGAAAACTATTCGCAAGATATAGAATTATGTCTGCCAGCAAAATCGAAAAAAGATGGTAATAAAAAACCGTTCACAGTATGCGAATGTCATAATAAACCAGGAACTAATGAAAATTGTTTGCAAATCGAAATAGTTCTTCTTTGTCATACTTGCAGGGTGCTATTTAGAAGTATGAAATGTTTCGAAAGCCATTATCGTCTTCCCCAATATGTAAAATGTAATCAAAACCACTTAACTAGTGGTCGTTCTCCAAATTTATTCTGCGCTACCTGTGGTATGATATTTAGTTCAGTTCAAGATGTGCGCCATCATTTAGAAATACATGCTCGTTTTAAAAAAGACTGCACAATGGATTTTCGATGCAACATTTGCAAGGTTATATTTCTAGGAATAGGAAGCCTTTTTTATATCCATTGGTCAAAGCATTCCAGAGATTCTTTGTGGATGGCTAGTGAGAAATCGTTTCCAAAAGATTCCATAATAAACTCGAAGCTGAGAAAGGCAGAGAATTCTTCTACACAAAATGCAATGACTTTGAGTACGTGTGTAGAAAAATACATTGAAGTAGCAGAACATGTCTGTTATAATTGTAAACTGCCTTTTATTACTCAAGATGATTTAAAGAATCATATTTCAGAATGTAGAAAATTTATGTCAGTTCAAGATGCACCTATTGTAGAAAACTCTAATACATATTTCGTAATAAGGATAACTTGTAGTTTATGTGATGATACTTTTATTAACAAAAGAACAGAATTTTATAAACATATGAAAGATAAACATAATTTGAGTACCGAACCTCGATTTATTTGTACATCATTCACGGCTGGAAATATGGTATTTATTTGCAGTGTCTGCACGGCAATGACTAAAAGTTTAGATGACTTTGAGGATCATTGGTTGAAACATAATACAACTCATGTATATTTTACTTGTTTGCATTGTAGTAAAATATATTACAACAGCTTAAATTCCTTCGTAGACCATGCTAAAAGACATGGTATTGATGCTAATGATATAGTGTCCTGTGTAGTAAGTTATGAACAAACAAAATTCAGTTGTAAATTTTGTAATATTGGTTTTGATTCTCCTCAAAGTATGGAGGAGCATGCTATTATTCATAACACAAACAGCCAACAGATAAGTCCTAAGATTAGTCAAGTTACAAATCAAGACAGCTCTGCAACAGTATCAGAGACAGATTGTGCTTCCAATTTTGCAAAGCTGGTTGAATTGTCTATTGAAAAGCAGATAGATGGATCAGTACAAATGGAGACTCAAACAATGGAAAAGGCAAGCGAAATTTGTCCAATAGAATCTAGTATAGACAAAAGTAGGGACAAATTAATCAAGATATTAGAAGGAGATGAAGATGATTCTGAACATGAATTAATAATAGATTTGACAAAACAATCAGAAGAATGTAATGAAGGATTAAAAGAAGACGGAAGTAAGGAAAGACAGACTACATCTAATCTTACATTAGATAAATCTTCTATCAATCAAACTTGCGTCACGTCAGAGAATAATAAAGCTGATGCATTGGTAACAAATGTAAATATCCAAGTATCTTCACAAAATGTTGCAAAATTTAAAACTCAAAATGTTACAGATTCTCTTTTTACTGCTAAAAACATAAATCCTCAAATATCTAATTCAAACATTAAGTCTACAAATATTTTGCAAACAAATAATGTTAGTAATCATAATAATCTACTAGATATAGAAAAAACAACAACAAGTGACCAATCAATCACAAAAGATATAGAAAGTACACAAAATGTTGAAGTTCATGACAGAATTTCAATTATAAATCAAGAAGAATCAACAATTTTAACAAAAGAAACATCAGAGAAACAAAGTCCACCAAGACCAAAACAAGGGTTCTTAAGAGTAAAGACTCTTGCAGAGCTTACAGGTTCTGCAAATTTATGTGAACTTAGCAATTCTGCTGTTGAAAATGCTAATGAATTAGCCAAGCACTTCAAAAGTCACCATGCTTCGAACAAAGATAATAATGAACACAAAACTACAGAAAAAGAATTAGTTTCAAAACAATCTGAAACAAACAAATTTATTGCTAATAAAAAATTAAAAATTGTTTCTAATACAAATTCAAATACGTTACTGTTATCTTCATATAATTCAGGCAATATAAAATTAGTGATTCAGAAACCAGTTATGAAATCTAATACTAAAGTAATAAATAATCAGCAACCACAGCAATTCCAAATAAATACAAATCAAAAGGAACACTCATCTTCTCCGGGAAATGTAACATCAGTATATCATAAAAACTTACCAACTTGCAATTTCGTTCGAACAACCACAGCTATGCCACGTTTTACTATTTTGAAACCTACCAAAGTAATAGCACATACTGCTAATATACAGAATTTACAGAGAACACATGTAGCATCTTGTTCTACCAATGAAAATAAACAAAAGTCTTCATTTGCAAAAAAGACTTCAAATCATACTGTACATAAGTGTAATCATTGCAATTTTGCTTCAAGTAATTCTGCAGAATTCTTAATGCACAATTTACCAGGTAATCATTCAACTTGTAAGAAGCAATATTTGCAAAATGACACCCAAGCGGAAGAACTTAACAAATTTGATAATTCACAAACAATACCCACAATTAATACTATTCGAAACAATCCAAATCCCAAACGATGTCAACAAACTACTATGAAGCAACCAGGAATTAACTATGCGTCTTCATCTGTCCATGATCAATATTCTTATCTTGCTGCTGACACTTCGAATAATAGTAATCAAATACTTAAACAAAATCAACCAATAATAACTAATCATCCAATAACAGAAAATACAACCCCTATTTATTATAAAACTCCAAATACTAGCAGTGGTGGAATGTCAATAGTGATCAATCAAACTACACCTACTGTTCAGAATATACCCACAATAGGAATCCTGCAACAACCAGTGCAGCAACGAATATATCAACAACAGGATTTAGTTCAATTTTCCGAATCGGATGCTGTTTTTCAACTGGCAAATCAACCAAGTGTTACAACTTATCAAGTTAGATATGTATGTCCTTATTGTTCGAAAAGTTTTGTTTCTGAAGATTATATGCAGATACATATAAATGAGCAACACAATTTTATATGTGATATTTGTAGTTTGCGTTTATACAGTTTTAACGATTTAAATCTTCATAAAATTCAGCATAGTTTGTTGTAA
- Protein Sequence
- MEISNEELFSSRHSVDNYSEQVINMSLSLPNPKPKGTNAKYKNIQDTSYIFRKRSRSNRLKQLLRRGDTLEDLCKLLCKPVIVNVTKLSVSEIKQWCKKDLHQSKAENILTQKKKFKPRIPRTRFCKRKKKSKQKQLSCLCNSENEVKPQNMLFSKKAEIENKNCIKNLLEDVKQPHIKLQRIDEVINKIAQSFARVTPIKECETIIQTECGTNIQSECETNIQTRCETSVQRRCDTSIQTEETQTELSIPAPEQLKLSSVNIDTDKYQQNLKTVTIAIRSHANETLQLNKCADLDSDSDSDSDFNTNSDFKSNSDSDSNTGNSRNTNERRHRIIYNSHTDDNNRYNKSNANNARIISNKLKRSMRNSSKEISKINLVNEKYNIIKKRCTDKNSLFQASQRPSILDRISALCDPDDDDDEGIKEGNTSSCVPSKLNLECIIKDGTSVKGKNEDAMTIEKPIVENNKIKEQIQEPFPFDRNFIQRYKLFKELKVFLIKFDAMKDSNTTYSATEIEKMTERFTNSYVNLNSSKLQYSNEKSINNPSFISIFSKDSNVNIEKSTDTTKHVSSSSIDSIPNKNIYTTTKRAQSTKLLSNSSEKLPPNLIRNAKIQQERNSQIQKVCHNLTKSFEDSFKKRFAQNTISNAKHKLIVPIPTIKSTLLYSSQKSTNKNFELSNVVENIDNIDKSTGKTFSLKKKIPEISSPKENSMKLVIDARFQEQVGVDTSGVTNFKLHLSKKNKKHESEKHTFAPKTCGKTTNVTTTKIATKKSASTSYSSIVSPKKHKRLRNNHGYKCIVCDLCFEDYSDLQQHLITHTQKQNNSLVNSLKTSNMSPEKSQDMISQSSKAKISEPSQVSSEHKSGEHTASQYVTKKDNGQQKKKDAITKSSLSKEKRKRRIKRISNSNKCSICSKSFEAMADLAAHIFLHTEKELQQAYKLAKKKLNGTEKYKQTRTEQTANSIKNVNSTVNIADNIVERIQKVNDKEKTLFIQKPNKSLITEDSEIRDTESITMKENYSQDIELCLPAKSKKDGNKKPFTVCECHNKPGTNENCLQIEIVLLCHTCRVLFRSMKCFESHYRLPQYVKCNQNHLTSGRSPNLFCATCGMIFSSVQDVRHHLEIHARFKKDCTMDFRCNICKVIFLGIGSLFYIHWSKHSRDSLWMASEKSFPKDSIINSKLRKAENSSTQNAMTLSTCVEKYIEVAEHVCYNCKLPFITQDDLKNHISECRKFMSVQDAPIVENSNTYFVIRITCSLCDDTFINKRTEFYKHMKDKHNLSTEPRFICTSFTAGNMVFICSVCTAMTKSLDDFEDHWLKHNTTHVYFTCLHCSKIYYNSLNSFVDHAKRHGIDANDIVSCVVSYEQTKFSCKFCNIGFDSPQSMEEHAIIHNTNSQQISPKISQVTNQDSSATVSETDCASNFAKLVELSIEKQIDGSVQMETQTMEKASEICPIESSIDKSRDKLIKILEGDEDDSEHELIIDLTKQSEECNEGLKEDGSKERQTTSNLTLDKSSINQTCVTSENNKADALVTNVNIQVSSQNVAKFKTQNVTDSLFTAKNINPQISNSNIKSTNILQTNNVSNHNNLLDIEKTTTSDQSITKDIESTQNVEVHDRISIINQEESTILTKETSEKQSPPRPKQGFLRVKTLAELTGSANLCELSNSAVENANELAKHFKSHHASNKDNNEHKTTEKELVSKQSETNKFIANKKLKIVSNTNSNTLLLSSYNSGNIKLVIQKPVMKSNTKVINNQQPQQFQINTNQKEHSSSPGNVTSVYHKNLPTCNFVRTTTAMPRFTILKPTKVIAHTANIQNLQRTHVASCSTNENKQKSSFAKKTSNHTVHKCNHCNFASSNSAEFLMHNLPGNHSTCKKQYLQNDTQAEELNKFDNSQTIPTINTIRNNPNPKRCQQTTMKQPGINYASSSVHDQYSYLAADTSNNSNQILKQNQPIITNHPITENTTPIYYKTPNTSSGGMSIVINQTTPTVQNIPTIGILQQPVQQRIYQQQDLVQFSESDAVFQLANQPSVTTYQVRYVCPYCSKSFVSEDYMQIHINEQHNFICDICSLRLYSFNDLNLHKIQHSLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218063;
- 90% Identity
- iTF_00219387;
- 80% Identity
- -