Bter003934.1
Basic Information
- Insect
- Bombus terrestris
- Gene Symbol
- MBD-R2
- Assembly
- GCA_000214255.1
- Location
- NW:391057-403950[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1 2.8e+03 -2.8 0.0 44 68 433 457 431 459 0.92 2 2 3.1e-17 7.6e-14 50.2 0.2 6 69 540 603 535 611 0.90
Sequence Information
- Coding Sequence
- ATGAAGCGACGACGTGTAGCGTCGCATGTTAAAAGGATATCGCTTGTGAGAACAATGAGAATGGCGCGCAAATGTTGCGTGCGTAGCTGTGAGGCCGATGTGCAAGATGCGCGTGCTAAAGGGTTACCGCttcataaatttccaaaagatattaatttaaggAACAGATGGTTGACTAGTGGTGGATTCGAAGCGAGCTTTAAACCTTCACCAGGTCAGGTTGTTTGTCATAGACACTTCAAACGAGCCGACTACGAAGCTGCTAAAGGACATAAATTGCTTCTACGTAAGGGCAGCGTTCCGTCGGTTTTTGCAGACTATGACAATCATCCAGATCCTGTAATTATGTCTGTAAAATCATCAACTTCTTATGCACAGGAAGATTTAGATCTTATTAATTCTGAAATTCTGAACTTAGAACAATCTACCTCTTCACTGAATTCTGGTCTCAGAACATTAAAGTCTAATAATTGTGGAGAAACATGTTCTTCTCGACCAGAACCATCAGTTAATTCCTTCAATTTACTAGATTCAACAGAATTACTTGATAATGGATGTAAGaacgtgaaagaagaaaatgtatatactgtGAAAcaagagataaataaaaattcagaaatggAAGTGAATACTATGGCAGTACAATTAGGTATTGTTGAATCTGATATAGCAATAAAACATATACAAAAAGATTTGGCCATTAAAGAGGAACTGAAAACTATGGAAGTGGGAGATGAAAAAACATTTGATAAACCAGAAGAATTAAAaccaaaaatttttaatcgaggTGGACTAAAATTTTTTCCTGGAGCCAAATTGGAAGCGAaagatttcaatgaaaaatgGTATTCAGCGAAAGTAGTTGAAACTGATTGGGATGAACGAGAAGTATTGATACGTTTTGACAAATGGAGTTCAAGGTTTGATGAATGGATACCTATGGATAGTTCAAGATTACGTGTATTGCAAACACAATCAAAcgAACAAACCTGGAATCTACCATCTCAggaaacaaaaatgaaagacTTTTCAATGGGGGAAAGGATACTTGCTACGTGGGCTGATGGTAGAAAATATCCAGCTAAAGTAAATGCCGTCTTAGGAAACGaTAGATATGATGTACTGTTTGATGATGGATATACAAAGACAATTAAATCGtcaaaaatgacaaaaatcgCTACAACAGTCACAAAGCAACCTAGTCAAACTGAAGAATATATAGGAAGCAAGCAAGAAAGAagagataagaaaagaaagcataCAGTGATGGAGTTATTTCATACACATTATAGAAAACGttcaaaaaatgaaacagataaattaataaaaaaggaaggaattatagttaatgaaaatgtagaatgcttttcggaaaataaaattgatttagatGGAACTTTATTTGGGCCTTGCTATGATCCAGGCACAGATTTATTACGTGGGTTTGATACCAATGTATCTAAAATGAAAGCTTATcctaaaaaaagtaaaaaggaagTATCTAAGAGTGAAATGGATCAAGTAGAAGATGTGGGTCCTGAATGGATTGATGGAGAACCTCAGGGAACTGAATCTTATATAGTGGATGGAAATGATGGGCCGCGTCGATCAATAATAGTTGCAGACAGGAGATTACCACCTGGATGGCAAAAACATTTTACTCAAAGAAAAGCTGGTACGTCAGCTGGAAAATGGGATGTATTATTTCTACATAAATCAAGTGGAAAAAAATTTAGatcaaaaaatgatattagggcatttatggaaaatcaGGGGCAATTCGACTTTGATccagaaaaatttgatttttgcattcatcgaaaaaagaaaaatcaaagtCAAAAAGCAAAACAAGATATCATTGTGGATACTCCAAAAAAGATTAAGACTTTATTGCCTAAAACAAAGGCAACGCCAATAACTGAGAATTCTTTACCTGTTCCTCCAAGTACACCAGTTACAACATTATTATCTACATCAAGTACATCTATTAAAGATGGTGGAGTAATTTATTCTGTTTTTATTGGTGGACTTCGAGTAGAAATGGAGGACAGTGCTTATAAATGTCCGAAACAAGGATGTAGTAAAACATTTAGGAAGGAAAATCTTCTACAAATGcatataaaacattatcatccagaatattcaaaatttttggGATCTACACCAAATGTTGCAGATTTAGCTTATGCAAGAACAATTGGGGAATCTGTTGAAGATATTATTCCAAAAAAGTCaaataatttgttagaaaagtgcaataaatttggaaagagaaaatttattcaagaTAAATCATTGTATGTTTCATCATCTTCTGTAACAAGCACTCTTCAACCTATATCGCCAACAGCAATTGTATCAACAACAGTAGAAACAGAGGATGAAGTAGACCAAATGGAAAAGTCCAATGATGTGCAAACAGATGATATTAAAATGGATAGAATGTCTCCAAGTTCTAGTCATAGTTTAGATATGGATGATGAGATTGAACAAAAACAAGAAGATGCATGTGCAATGTCACCAGGAACACTATTTGATATGAAAATTAGGGAAGAAAAAACACAAAGTGGCATTAAGACACTTCTTCCAGTAAGACCAGCCATGTCTTCAGAAGCACAGCGAATTGATAGATCAAAGTCTTTAGATGAAGCTATTCATATCGACAAAATAAAAGGTCAAAGGAAACGACAATTATCAGAATATAGTTCTGATGCATTAAACAGAAGTAAAAAGCGACATGAATTTCCGGACGAGTATGGTGATTTAGATGATAGTACTATGGATATAGAAGGAGCAGGACCGACTACACCCACGTATAGATATAGTCGCAGAAAATCAGATTCAAGAAGTGATGAAAATAGCCAAAGTAgTCAACTAAACGATTCGCGTGTTGAAAAAGATGATCCCTTGAAAGGGAATGTTAGTAAAAAAGATACTAATGATGGGGAAgAGAATGAAGGAGTTATGATGATGATCAATGGTGAAATGGTGAAAGTTGAGCAGCTTCGtagagaagaaataataaattgcacTTGTGGATTTATGGAAGAGGATGGTTTAATGATTCAATGCGACCTTTGTTTATGTTGGCAACATGGTCACTGCAATGcaatagaaaaggaaaaggatgTACCTGAGaaatatgtttgttttatttgtcgGAATCCATATCGCCAACGATTatccaaaaaatattttcacgatcaAGATTGGATAAAAGAGGGAAAGCTACCAACATTATCTAGCAGAACAAAAAATCAGCATCGAGTTAACCAAAGAACAGCTATGTTAAAACGTTCTTATGATCTAGTTGCTGCTCTTTTACACATTCAGCAAGTTTTACATAGTTTAAGAGTAAAAATCAATGTAGCTCAaaagaaagatcATCCAAAGCTATATCTCTGGGCCAAAAATTGGGAAAAAGTTGAGGTACCAAAACCAAATGTTACACCAGTACCAATCATGGAGATTATGAAAGTAGGAAAAGAGTGTACAGATATTCCAAGTGAAGGTTTTCATCGAACTGAAgtaaaaacagaaacaaaGTTCAGTTTAAGAGATGATCATGATGAAAAGTCGATAGCCTCAGATTCAGAACTAATGAAGATATTagaagaagataatataaCTCCAGATGAATCTAAAATTAACGGCAAAAAGGAAGATATTATACATCAAACTAAAAGTCATATTCTTCTTGATGCACTTACGAAAAATGATACTTCAGAaggaaaatatacaaactCATTACCTTCAGAGGTGAAAACAGATAcagATATATACGAGAATAACGTATCTCCGACAACTATATCAGCGAATCACTTGCATGAAGAATTAAATGAACATGAAATGTCAGCACCGTTGCAACCTTTCATACCACAACCAGAAGCGCCAATTGACCCAGGAGAATGTCGAATGCGATTATTAGAACACATAGAACATTTTCAACATCATATAGATgcaaaattaacatttatcgaGGCAGAAGTTTGTGCTTTAGAAGCTATGGATCCTGAAGATACATCTACCTTGGATGTTCAGCCCCGAACTAAACAAACGGTTCAAATGCTTGTTCGAGATTTAAACACCGTGCGAAAATTAGCTGCTTTGTGTTga
- Protein Sequence
- MKRRRVASHVKRISLVRTMRMARKCCVRSCEADVQDARAKGLPLHKFPKDINLRNRWLTSGGFEASFKPSPGQVVCHRHFKRADYEAAKGHKLLLRKGSVPSVFADYDNHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSTSSLNSGLRTLKSNNCGETCSSRPEPSVNSFNLLDSTELLDNGCKNVKEENVYTVKQEINKNSEMEVNTMAVQLGIVESDIAIKHIQKDLAIKEELKTMEVGDEKTFDKPEELKPKIFNRGGLKFFPGAKLEAKDFNEKWYSAKVVETDWDEREVLIRFDKWSSRFDEWIPMDSSRLRVLQTQSNEQTWNLPSQETKMKDFSMGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYTKTIKSSKMTKIATTVTKQPSQTEEYIGSKQERRDKKRKHTVMELFHTHYRKRSKNETDKLIKKEGIIVNENVECFSENKIDLDGTLFGPCYDPGTDLLRGFDTNVSKMKAYPKKSKKEVSKSEMDQVEDVGPEWIDGEPQGTESYIVDGNDGPRRSIIVADRRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSKNDIRAFMENQGQFDFDPEKFDFCIHRKKKNQSQKAKQDIIVDTPKKIKTLLPKTKATPITENSLPVPPSTPVTTLLSTSSTSIKDGGVIYSVFIGGLRVEMEDSAYKCPKQGCSKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVEDIIPKKSNNLLEKCNKFGKRKFIQDKSLYVSSSSVTSTLQPISPTAIVSTTVETEDEVDQMEKSNDVQTDDIKMDRMSPSSSHSLDMDDEIEQKQEDACAMSPGTLFDMKIREEKTQSGIKTLLPVRPAMSSEAQRIDRSKSLDEAIHIDKIKGQRKRQLSEYSSDALNRSKKRHEFPDEYGDLDDSTMDIEGAGPTTPTYRYSRRKSDSRSDENSQSSQLNDSRVEKDDPLKGNVSKKDTNDGEENEGVMMMINGEMVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYVCFICRNPYRQRLSKKYFHDQDWIKEGKLPTLSSRTKNQHRVNQRTAMLKRSYDLVAALLHIQQVLHSLRVKINVAQKKDHPKLYLWAKNWEKVEVPKPNVTPVPIMEIMKVGKECTDIPSEGFHRTEVKTETKFSLRDDHDEKSIASDSELMKILEEDNITPDESKINGKKEDIIHQTKSHILLDALTKNDTSEGKYTNSLPSEVKTDTDIYENNVSPTTISANHLHEELNEHEMSAPLQPFIPQPEAPIDPGECRMRLLEHIEHFQHHIDAKLTFIEAEVCALEAMDPEDTSTLDVQPRTKQTVQMLVRDLNTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01539602;
- 90% Identity
- iTF_00216442;
- 80% Identity
- iTF_00230729;