Basic Information

Insect: Bombus superbus
Gene Symbol: -
Assembly: GCA_014737385.1
Location: JACXIK010000011.1:11611467-11612564[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.9e-05 0.0055 16.8 4.0 1 23 94 116 94 116 0.98

2 9 1.1e-06 7.4e-05 22.7 0.5 1 23 122 144 122 144 0.97

3 9 0.00037 0.026 14.7 2.0 1 23 149 172 149 172 0.97

4 9 1.5e-05 0.001 19.1 0.5 1 23 178 200 178 200 0.97

5 9 2.4e-05 0.0016 18.5 0.2 1 23 206 229 206 229 0.97

6 9 6.3e-07 4.3e-05 23.4 0.5 1 23 239 261 239 261 0.94

7 9 2e-05 0.0013 18.7 1.8 1 23 265 287 265 287 0.95

8 9 6.7e-06 0.00046 20.2 0.1 1 23 293 315 293 315 0.98

9 9 3.9e-07 2.7e-05 24.1 1.0 1 23 321 343 321 343 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.9e-05	0.0055	16.8	4.0	1	23	94	116	94	116	0.98
2	9	1.1e-06	7.4e-05	22.7	0.5	1	23	122	144	122	144	0.97
3	9	0.00037	0.026	14.7	2.0	1	23	149	172	149	172	0.97
4	9	1.5e-05	0.001	19.1	0.5	1	23	178	200	178	200	0.97
5	9	2.4e-05	0.0016	18.5	0.2	1	23	206	229	206	229	0.97
6	9	6.3e-07	4.3e-05	23.4	0.5	1	23	239	261	239	261	0.94
7	9	2e-05	0.0013	18.7	1.8	1	23	265	287	265	287	0.95
8	9	6.7e-06	0.00046	20.2	0.1	1	23	293	315	293	315	0.98
9	9	3.9e-07	2.7e-05	24.1	1.0	1	23	321	343	321	343	0.99

Sequence Information

Coding Sequence: ATGTTGAAAAATCACGTTGTTGATTGCAGAACACTCGGAGTCGTACAGTGGGACGCGAAATCCAAAGACTGCAGCGACCACCAGGCCATCAAGATCTTCGAATCAAGATCACCTATATCGTCAGAACCATCGCCAGGGCAAGTGAATCCTTCTTCGTCCGATAAAAGAGATCGCACCTCGAAGGAGCCAAATTACGTTACAAGTTCTGACAACGATTCGCTACTGACAAATTCATCCACAAAGAGGAAGAAGAACAAAAGATTCGAAGATCAAGAACGATACAACTGCTCCACCTGCAAGTTACATTTTGACAGACAGGGAGACTACAAGCGCCACATGATCAAGCACAGCGATCTGCGTCCTTACAAGTGCGAAATCTGCGACAAAGCGTTCAAACGTTCCTCAGAGGTGTCCAACCACAGTCAGATCCACCGTGGTATCGAATACGCGTGCGAAGTATGCGATTTCACCACGATAAATAAATTCTCTTTAAGAATGCATCATCGTCGAGTTCACCAGCGTGACTTTCGTTATCGTTGCGATCAATGTGACAAGGGTTTCATGTCTAATTACGATCTGGAGGACCACAAGGCCAGTCATCTAGGCAGGAAGACCTTCATCTGCGAATTCTGTGGCAACGCCTACTCCCAAAAATCCTACTTGGTGGCGCACAAACGGGTAATTCATAGAATTCAAAAAAGCGCGCCGAAGGAGTTCCAGTGCAACATCTGCAACAAGAGTTTCGCTACCGAGCAGAATCTTCGTAATCACGTTGGCCTACACTCGCAGATATTTCTATGCGCCCAGTGCGGCAAGAAGTTCGCAACCAATCACGCTCTGAAGCTTCACGGCCGGAAACACACAGGGGAGAAACCGTACGAGTGTATGGTTTGCTCGAAAGCTTTCGCCAGATCGGCTGCACTCAGAGTGCATAAATTAACACACACGGGCGAGAGGCCGTACGTGTGTGATCTTTGTGGCCAGAGCTTTACTCAGAGAAGTAGCATGATGGTACATCGACGAAAACATCCCGGAAGTCATCCTCCGCCCCCTCCTCTACTTCTTAGCAGACTCGAGAGCGATGGACATAAGTTATAG
Protein Sequence: MLKNHVVDCRTLGVVQWDAKSKDCSDHQAIKIFESRSPISSEPSPGQVNPSSSDKRDRTSKEPNYVTSSDNDSLLTNSSTKRKKNKRFEDQERYNCSTCKLHFDRQGDYKRHMIKHSDLRPYKCEICDKAFKRSSEVSNHSQIHRGIEYACEVCDFTTINKFSLRMHHRRVHQRDFRYRCDQCDKGFMSNYDLEDHKASHLGRKTFICEFCGNAYSQKSYLVAHKRVIHRIQKSAPKEFQCNICNKSFATEQNLRNHVGLHSQIFLCAQCGKKFATNHALKLHGRKHTGEKPYECMVCSKAFARSAALRVHKLTHTGERPYVCDLCGQSFTQRSSMMVHRRKHPGSHPPPPPLLLSRLESDGHKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00219264;
90% Identity: iTF_00219264;
80% Identity: -