Basic Information

Insect: Bombus superbus
Gene Symbol: Bcl11b
Assembly: GCA_014737385.1
Location: JACXIK010000040.1:1026509-1028295[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.5e-05 0.0031 17.6 3.2 1 23 9 31 9 31 0.99

2 16 1.6e-05 0.0011 19.0 2.7 1 23 37 60 37 60 0.92

3 16 0.00077 0.053 13.7 0.8 1 23 66 88 66 88 0.98

4 16 1.3e-05 0.00089 19.3 2.6 1 23 94 116 94 116 0.95

5 16 0.00025 0.017 15.3 3.5 1 23 122 144 122 144 0.96

6 16 4.3e-05 0.0029 17.7 2.9 1 23 150 172 150 172 0.98

7 16 8.5 5.9e+02 1.0 0.1 1 7 178 184 178 191 0.86

8 16 0.00023 0.015 15.4 0.1 2 23 214 236 213 236 0.96

9 16 6e-07 4.1e-05 23.5 2.8 1 23 307 329 307 329 0.99

10 16 0.00019 0.013 15.6 1.7 1 23 357 379 357 379 0.99

11 16 5.5e-05 0.0038 17.3 0.7 2 23 386 408 385 408 0.94

12 16 0.00018 0.013 15.7 0.0 1 23 414 436 414 436 0.97

13 16 0.00044 0.03 14.5 1.2 1 23 442 464 442 464 0.97

14 16 0.0014 0.097 12.9 9.7 1 23 470 492 470 492 0.97

15 16 1.2e-05 0.00081 19.4 0.0 1 23 498 520 498 520 0.96

16 16 0.0063 0.43 10.9 3.1 5 23 529 547 527 548 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.5e-05	0.0031	17.6	3.2	1	23	9	31	9	31	0.99
2	16	1.6e-05	0.0011	19.0	2.7	1	23	37	60	37	60	0.92
3	16	0.00077	0.053	13.7	0.8	1	23	66	88	66	88	0.98
4	16	1.3e-05	0.00089	19.3	2.6	1	23	94	116	94	116	0.95
5	16	0.00025	0.017	15.3	3.5	1	23	122	144	122	144	0.96
6	16	4.3e-05	0.0029	17.7	2.9	1	23	150	172	150	172	0.98
7	16	8.5	5.9e+02	1.0	0.1	1	7	178	184	178	191	0.86
8	16	0.00023	0.015	15.4	0.1	2	23	214	236	213	236	0.96
9	16	6e-07	4.1e-05	23.5	2.8	1	23	307	329	307	329	0.99
10	16	0.00019	0.013	15.6	1.7	1	23	357	379	357	379	0.99
11	16	5.5e-05	0.0038	17.3	0.7	2	23	386	408	385	408	0.94
12	16	0.00018	0.013	15.7	0.0	1	23	414	436	414	436	0.97
13	16	0.00044	0.03	14.5	1.2	1	23	442	464	442	464	0.97
14	16	0.0014	0.097	12.9	9.7	1	23	470	492	470	492	0.97
15	16	1.2e-05	0.00081	19.4	0.0	1	23	498	520	498	520	0.96
16	16	0.0063	0.43	10.9	3.1	5	23	529	547	527	548	0.93

Sequence Information

Coding Sequence: ATGATAGTCAATGGATTTACATACTATAAGTGTGATCATTGTGAGAAAATACTTTCAACCTCGTATAATTTTTTAATTCATCGAAATACTCATACTGGAGAAAAACCATATACATGCCACGTTTGCGGAAAAGGTTTTCATTCAGCATCTGGTTTGAACAGACACGTGCATGATGTTCATGCGAGAATAAAAAAATTTCCTTGCGATATATGCGGCCGTTGTTTGGCCTCCAAAGCTTCGCGGGATGAACACAGAAGAACTCATACAGGAGAAAGACCCTATGTATGCGAAACTTGTGGGAAGTCATTCAAACAGAGGGCATCTCTGCACGTTCACAAATCATTCCATTCAAAAGTTCTTCCGCATGAATGCTCCTTATGCAATCAAAGCTTTAAGAGAAAACAAGAATTAGATAAGCATACTTTCATCCATACCAAGCAGAAACCTTATTCTTGCGATGTCTGTGGCAAACAATTTCGTAGTAAGGGCTGTATTAGTCGTCATAAACGTATTCATAATAATCAAAGGTCCTACATTTGTCCTGTATGCGATGCAAAGTGGAAGACCGAGTCTGATCCTGTTATGCAAATATCGACGGCCGAAAGCGAAAGTACAAACGTTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGATCATATGAACAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGTTAGTGTATCATGGTCAAGATAAGGATTTTGAGGTTCACATATCAATGCATGGTAGAAATTATAATAAGTTAAAAGATGCCACAGAAGATAAAACTTTGGAATGTACAAACAAAGTGAAAAAGAAAGGCAAGAATAATGAAAAATCTTTTGATCAGGACATTGAAAAGCCTCTGTGTTATACTTGCAACTTATGCGAGAGAAATTTCACAAAGAAGTCTGAATTGAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATCCGGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGATCGTGTTTCTTACAAATGTGAAACGTGTAAAAAGGTCATATTTACAAAACGAGGATTCCTACGCCATATTCGTGTCCATTCTGATAAACGACCATGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGATCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAATATGCTTGCGACATTTGTGGTCGCGCGTTTGCGAATAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGCCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGCAGGCAGAGGCTAACTCATCATGAAACCACGCATACAGGTATCAAAGCTTTTGCCTGCGAAATCTGTGGTAAAACGTTTTCCGTCAAAGGAGAAGTCGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCGACTGTAAGTGCGGCATGAAATTTGGCCAAAAAAGATATTTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCAGAGTTATTGGGAAATAATAATTGA
Protein Sequence: MIVNGFTYYKCDHCEKILSTSYNFLIHRNTHTGEKPYTCHVCGKGFHSASGLNRHVHDVHARIKKFPCDICGRCLASKASRDEHRRTHTGERPYVCETCGKSFKQRASLHVHKSFHSKVLPHECSLCNQSFKRKQELDKHTFIHTKQKPYSCDVCGKQFRSKGCISRHKRIHNNQRSYICPVCDAKWKTESDPVMQISTAESESTNVEEVEYIQCAQCDIVFVNMKYLIDHMNSEHEAQMHYCQYCKLVYHGQDKDFEVHISMHGRNYNKLKDATEDKTLECTNKVKKKGKNNEKSFDQDIEKPLCYTCNLCERNFTKKSELKKHINRHSDVNPIQNPDETELVNKAKQIINDRVSYKCETCKKVIFTKRGFLRHIRVHSDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00216545;
90% Identity: iTF_00216545;
80% Identity: -