Basic Information

Insect: Bombus confusus
Gene Symbol: Bcl11b
Assembly: GCA_014737475.1
Location: JACXIV010000045.1:1055349-1057366[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3e-05 0.001 19.2 1.1 1 23 86 108 86 108 0.99

2 15 1.8e-05 0.0014 18.8 2.7 1 23 114 137 114 137 0.92

3 15 3.2e-05 0.0025 18.0 1.3 1 23 143 165 143 165 0.98

4 15 2.5e-05 0.0019 18.3 2.6 1 23 171 193 171 193 0.94

5 15 0.00071 0.055 13.8 3.5 1 23 199 221 199 221 0.96

6 15 4.7e-05 0.0036 17.5 2.9 1 23 227 249 227 249 0.98

7 15 8.3e-05 0.0064 16.7 0.1 2 23 291 313 290 313 0.96

8 15 3e-07 2.3e-05 24.4 2.9 1 23 384 406 384 406 0.99

9 15 9.3e-05 0.0072 16.5 1.5 1 23 434 456 434 456 0.99

10 15 6e-05 0.0046 17.1 0.7 2 23 463 485 462 485 0.94

11 15 0.00021 0.016 15.5 0.2 1 23 491 513 491 513 0.97

12 15 0.00048 0.037 14.3 1.2 1 23 519 541 519 541 0.97

13 15 0.0016 0.12 12.7 9.7 1 23 547 569 547 569 0.97

14 15 2.7e-05 0.0021 18.2 0.0 1 23 575 597 575 597 0.96

15 15 0.0096 0.74 10.2 3.6 5 23 606 624 604 625 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3e-05	0.001	19.2	1.1	1	23	86	108	86	108	0.99
2	15	1.8e-05	0.0014	18.8	2.7	1	23	114	137	114	137	0.92
3	15	3.2e-05	0.0025	18.0	1.3	1	23	143	165	143	165	0.98
4	15	2.5e-05	0.0019	18.3	2.6	1	23	171	193	171	193	0.94
5	15	0.00071	0.055	13.8	3.5	1	23	199	221	199	221	0.96
6	15	4.7e-05	0.0036	17.5	2.9	1	23	227	249	227	249	0.98
7	15	8.3e-05	0.0064	16.7	0.1	2	23	291	313	290	313	0.96
8	15	3e-07	2.3e-05	24.4	2.9	1	23	384	406	384	406	0.99
9	15	9.3e-05	0.0072	16.5	1.5	1	23	434	456	434	456	0.99
10	15	6e-05	0.0046	17.1	0.7	2	23	463	485	462	485	0.94
11	15	0.00021	0.016	15.5	0.2	1	23	491	513	491	513	0.97
12	15	0.00048	0.037	14.3	1.2	1	23	519	541	519	541	0.97
13	15	0.0016	0.12	12.7	9.7	1	23	547	569	547	569	0.97
14	15	2.7e-05	0.0021	18.2	0.0	1	23	575	597	575	597	0.96
15	15	0.0096	0.74	10.2	3.6	5	23	606	624	604	625	0.93

Sequence Information

Coding Sequence: ATGACTGAAATCGATGTGAAACACGAGCCAAGCAATTCGTCAGATAATGAACATACGGAACAACAAAATAATTGTGTCGGAGTACAAGTATTGTCAGAGACTGATCTTAATATTAACAGAAACCGAAGAACAGAATTAGAAAGTAACTTGGGAATTGCTTCTAAAAGATATAAAAAACACGTTTCGTCAAAACGTACTTTGGAACAACGAAATGAATTAGCTCGTTCGAAAATGATAGTCAATGGATTTACGTACTATAAATGTGATGATTGTGAGAAAATACTTTCAACCTCGTATAATTTTCTAATTCATCGAAATACTCATACTGGAGAAAAACCGTATACGTGCCATGTTTGCGGGAAAGGTTTTCATTCAGCATCTGGTTTGAACAGACACGTGCATGATGTTCATGCGAGAATAAAAAAATTCCCTTGCGATATATGCGGTCGATGTTTCGCCTCCAAAGCTTCACGAGATGAGCACAGAAGAACTCATACAGGAGAAAGGCCCTATATATGCGAAACTTGTGGGAAGTCGTTCAAACAGAGGGCATCTCTGCACGTTCACAAGTCATTCCATTCAAAAGTTCTTCCGCATGAATGCTCCTTATGTAGTCAAAGCTTTAAGAGAAAACAAGAATTAGATAAGCATACTTTCATCCATACTAAGCAGAAACCTTATTCTTGCGATGTCTGTGGCAAACAATTTCGTAGTAAAGGCTGTATTAGTCGTCATAAACGTATTCATAATAATCAAAAGTCCTACATTTGTCCCGTATGCAATGCAAAGTGGAAGGCCGAGTCTGATCCTGTTATGCAAATATCAACAGCCGAAAGCGAAAGTACAAACGTCGAAGAGGTAGAATACATCCAGTGCTCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGATCATATGAATAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGCTAGTATACCATGGTCAAGATAAGGATTTTGAGGTTCACATATCAATGCATTGTAGTAATTATAATAAATTAAAAGATGCCACAGAAGATGAAACTTTGGAATGCGCAAACGAAGTGAGAAAGAAAGACAAAAATAATGAAAAATCTTTTGATCAAGACATTGAAAAGCCTCTGTGTTACACTTGCAATTTATGCGAGAAAAATTTCACAAAGAAATCTGAATTGAAAAAGCACATAAACAGACATTCCGATATTAACCCGATTCAAAATCCGGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGAACGTGTTTCTTACAAATGTGAAACGTGTAAAAAGGTCATATATACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTCTGATAAACGACCATGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGACCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAACATGTTTGCGACATTTGTGGTCGCGCGTTTGCGAACAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACACTGCCCAAAAATGTTTCGGACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGCAGGCAGAGGCTAACTCATCACGAAACTACACATACAGGTATCAAAGCTTTCGCCTGCGAAATCTGCGGTAAAATGTTTTCCGTCAAAGGAGAAGTCGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCAACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCATAAAGAAGCATCTTCGTGGTTGTTAGCAGAATTATTGGGAAACAATAACTGA
Protein Sequence: MTEIDVKHEPSNSSDNEHTEQQNNCVGVQVLSETDLNINRNRRTELESNLGIASKRYKKHVSSKRTLEQRNELARSKMIVNGFTYYKCDDCEKILSTSYNFLIHRNTHTGEKPYTCHVCGKGFHSASGLNRHVHDVHARIKKFPCDICGRCFASKASRDEHRRTHTGERPYICETCGKSFKQRASLHVHKSFHSKVLPHECSLCSQSFKRKQELDKHTFIHTKQKPYSCDVCGKQFRSKGCISRHKRIHNNQKSYICPVCNAKWKAESDPVMQISTAESESTNVEEVEYIQCSQCDIVFVNMKYLIDHMNSEHEAQMHYCQYCKLVYHGQDKDFEVHISMHCSNYNKLKDATEDETLECANEVRKKDKNNEKSFDQDIEKPLCYTCNLCEKNFTKKSELKKHINRHSDINPIQNPDETELVNKAKQIINERVSYKCETCKKVIYTKRGFLRHIRVHSDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKHVCDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKMFSVKGEVVRHRAIHNEEKPFNCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230175;
90% Identity: iTF_00230175;
80% Identity: -