Bsup005866.1
Basic Information
- Insect
- Bombus superbus
- Gene Symbol
- -
- Assembly
- GCA_014737385.1
- Location
- JACXIK010000032.1:1403207-1408057[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.5e-13 1.2e-09 37.4 0.0 1 37 262 299 262 304 0.90 2 4 1.9e-12 3.2e-09 36.1 0.1 2 39 317 354 316 357 0.94 3 4 5.4e-19 8.9e-16 57.1 0.0 2 45 372 416 371 416 0.97 4 4 6.2e-19 1e-15 56.9 0.1 1 42 423 465 423 466 0.97
Sequence Information
- Coding Sequence
- ATGAAACTGTACCCACTGAAACGAGCCTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGACCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTACAAGAGGCCGAGAACCACGTTCGAACCTCGTGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGGTGTGGGGCGACTTACAGATTTACGGCAACGCACTGGGCAGATCGTTTTCACTTGAAATAAAAAAAGGTGACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACCACGATTACACATTTAAGGGACCCGGATCATCATTCCACAGAGATTCAAAATTGTGACAGTGTAAAGATCAAGTTTGAAACGTTGCACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGACCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGACAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCGAGGGGTCACCCCGGACAATCCAGCTCTCATCATCATGGTTCGAAATCGTGGACCCAAGAGGATATGGATGCCGCATTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTGTGGCAAAGAGCACATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACTAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGTTAGAAGCGTTACGGACCGGGACGATATCTGCGAACAAAGCTTCAAAGGCGTTCGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCTGCGCCTTTCAACGCAAGTCCCACCACCTGGTCGCCCGCCGATCTGGATCGCGCCCTCGAAGCGATACGTTCTGGTCAGACGTCAGTACAGAGAGCTTCCACCGAATTCGGTATACCGACGGGAACGTTGTATGGTCGATGTAAAAGAGAAGGCATCGAACTTAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTTTGGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTATAACCTGCCCTACTCTTCTTTATACGGTCGCTTTAAAAGAGGAAAATACGAAGAACCAGCAGTGGGCGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MKLYPLKRASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKEVWGDLQIYGNALGRSFSLEIKKGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRXXXXXXXXXXXTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -