Bson009175.1
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- -
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000008.1:15575805-15579496[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.011 1.2 10.3 0.0 1 20 45 64 45 66 0.95 2 19 0.052 5.8 8.2 2.3 1 21 83 103 83 104 0.96 3 19 0.00013 0.014 16.4 3.0 2 23 139 160 138 160 0.94 4 19 0.00018 0.02 15.9 2.2 1 23 164 186 164 186 0.97 5 19 0.00017 0.019 16.0 0.6 3 23 194 214 193 214 0.97 6 19 3e-05 0.0033 18.4 3.6 2 23 221 242 220 242 0.96 7 19 0.11 12 7.1 2.5 1 19 251 273 251 275 0.73 8 19 0.17 19 6.6 0.2 3 23 281 300 280 300 0.95 9 19 0.46 51 5.2 2.3 3 13 308 318 307 321 0.89 10 19 0.043 4.7 8.4 2.4 1 23 409 431 409 431 0.97 11 19 4.1e-06 0.00045 21.1 1.1 3 23 442 463 441 463 0.96 12 19 0.00014 0.016 16.2 4.9 1 23 469 491 469 491 0.98 13 19 0.035 3.9 8.7 0.4 1 23 495 517 495 517 0.97 14 19 5.1e-05 0.0057 17.6 2.1 3 23 525 545 523 545 0.96 15 19 1.3e-05 0.0014 19.5 0.2 1 23 551 573 551 573 0.98 16 19 0.079 8.8 7.6 0.9 1 23 579 601 579 601 0.97 17 19 2.3e-06 0.00025 21.9 0.1 3 23 609 629 607 629 0.97 18 19 4.3e-07 4.7e-05 24.2 1.1 1 23 635 657 635 657 0.98 19 19 1.2e-07 1.3e-05 25.9 1.9 1 23 663 685 663 685 0.99
Sequence Information
- Coding Sequence
- ATGCAACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCGTCCAACGAGGAAGCTCGATCGTTTGTGAACAAAGTGATCGATAACTCTCACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTCGACACGGAGGCTGCTCTGTTGGTACATAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTgaaaagaaatacacgtgtgaCGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGCGAAGGACAAAACGATAAAAACGAAACGGAAGGAACCGAGTGTTTCTGCTGGTCCGATCGAGTGCAACGTGTGTCATAAAGTttttaagaagaagaaatatctaAATGTTCATAAAACGTTGCATGGAGCGCCTCATATTTGTCACGTATGCGGTGCCAAATTGACTTCTGAATATTATTTGAAGATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAGGTGTGTAACAAGGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAGTGATAAACCGTGCATTTGCGAGGTTTGTCACAAGTCTTTCGGTAATAGAGTTTACTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAAAACAGGAGGAAGTACAGATGCGAAATTTGTGGGTTCGAGACCTTCTACAGTTACTGTTATAAGGAACATCTGTGGACGCATACCGGAGAAAGTCAGGTGGCTTGTGAGGTTTGCGGTAAATTGATCAGGAGACAGTATATGAAGATTCATATTAGAATACACACTGGTGAGAAGCCGGAGATCTGTGAATTTTGTGGCAAAGCATTTAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAACAGATAGAAACGCTCGAGGATATGGAACTGGTCAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGATACGTTAGAAGAAAGTAACGACGCGGAGATGAAACTGAttctagaagaagaagaagaagaagaagaagaaacagggAACGTTAACATAgattataacaataaatacgAGAGCAGAAAATGCTCGGTCATTTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAGAAACTTCAATTTCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCATTGCGAGGAATGTGATAAAAGTTTCGCGGATGAAGAGAAATTGAAGAAACACATGATCAAAGTGCACCAAAAGGAGAAGCCTTTTCAATGTGTTCTCTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACTTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCGTTTACATAAAAAGAAACATAACGAGGAATATGTGACGCACTGTGAAATCTGCAGCAAAGGCTTCTACACGAACCAAACCCTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAAGTGTGCAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCACATGAAGTCTCACGGCGAACGAGAGAAACACAAGTGCAATATTTGTAATTTCGAAAGTTACTGGAAGGCGGCTCTAAAGGTGCATCTTAAGATACACACTGGAGAGAACCTGATTGCCTGTGAGCTATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATTCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGACCTTCAGCGTTCGAAAATATCTGATTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAGGTATGTCAGAAAAGGTTCACGCAGCAGGGTTCACTGAATTCGCATATGAAGTCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MQPKSVKTIPAKRNQSRTAKSSNEEARSFVNKVIDNSHVVQEASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKEPSVSAGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSSDKPCICEVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESNDAEMKLILEEEEEEEEETGNVNIDYNNKYESRKCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEETGGHCEECDKSFADEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICSKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLIACELCGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKTFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -