Bson004613.3
Basic Information
- Insect
- Bombus sonorus
- Gene Symbol
- -
- Assembly
- GCA_029958995.1
- Location
- JARWAU010000004.1:16291048-16294474[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-13 1.8e-09 37.7 0.0 1 39 355 394 355 398 0.90 2 4 3e-12 7.2e-09 35.8 0.1 2 39 410 447 409 450 0.94 3 4 8.3e-19 2e-15 56.8 0.0 2 45 465 509 464 509 0.97 4 4 9.5e-19 2.3e-15 56.6 0.1 1 42 516 558 516 559 0.97
Sequence Information
- Coding Sequence
- ATGTCGTTCTTGCGAGGAGCCCGTCGCGCTGCTCGATACGGGTCGACGCACCGTGCCGGTGAATCGTTGTCGTACGCCGAAACTGGATCGCGAATACTGATTTTAGACCGAGCCACCGCAAACGGCAATCGCAAGATGAAACCGTACCCACTGAAACGAGCCTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTATAAGAGGCCCAGAACCACGTTCGAACCTCGCGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCACGGGAGCAGTAGTCTTGGAAACTTGCCAACGTAGCAGTAACAATAGTACCACTACTGGTACCaccaataataacaataacaacaacaacaacaacaacaacaataataacaacGCTAGCAGCAACGGCAACGGTAACAATACGagcaacaacaataacaacgGTGACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACTATTACACATTTAAGGGACCCGGATCATCATTCCACAGAGATCCAAAATTGTGACAGTGTAAAAATCAAGTTTGAAACATTGCACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGTTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGACACTCCAAAAAAAGACGGACCTACAAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGCTAGAAGCGTTACGGACCGGAACGATATCGGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATTGCGAGAAGAGAAGGTATCAGACTAGCTGCACCATTCAACGCAAGTCCCACAACCTGGTCGCCCGCCGATCTGGATCGCGCTCTCGAGGCGATACGTTCTGGTCAAACGTCGGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGGACATTATATGGTCGATGCAAAAGAGAAGGCATTGAACTTAGTAGAAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTCGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTACAACCTGCCGTACTCTTCCTTATACGGTCGCTTCAAAAGAGGAAAATACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MSFLRGARRAARYGSTHRAGESLSYAETGSRILILDRATANGNRKMKPYPLKRASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATTGAVVLETCQRSSNNSTTTGTTNNNNNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- -