Bsko008344.1
Basic Information
- Insect
- Bombus skorikovi
- Gene Symbol
- -
- Assembly
- GCA_014737355.1
- Location
- JACXIH010000074.1:1254434-1260997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00049 0.045 14.3 1.0 1 23 792 814 792 814 0.97 2 11 0.0092 0.85 10.3 0.1 2 23 888 909 887 909 0.95 3 11 0.37 34 5.3 0.2 3 23 1083 1103 1081 1103 0.95 4 11 0.0019 0.18 12.5 0.3 1 20 1186 1205 1186 1207 0.94 5 11 7.1 6.5e+02 1.3 1.3 2 23 1232 1255 1231 1255 0.71 6 11 0.079 7.3 7.4 0.2 1 23 1275 1297 1275 1297 0.97 7 11 1.9 1.8e+02 3.0 1.6 1 13 1304 1316 1304 1327 0.79 8 11 0.03 2.7 8.7 0.1 1 23 1346 1368 1346 1368 0.96 9 11 0.19 17 6.2 1.9 1 19 1823 1841 1823 1847 0.91 10 11 7.2e-05 0.0066 17.0 0.4 1 23 2014 2037 2014 2037 0.96 11 11 1.3 1.2e+02 3.5 0.4 1 23 2039 2061 2039 2061 0.95
Sequence Information
- Coding Sequence
- ATGGAAATTTCTAATGAAGAATTATTTTCTTCGCGTCATTCGGTTGATAATTATTCAGAGCAAGTAATTAACATGCCATTACCATTACCAAAGCCAAAACCTAAAGGTACTAATGCAAAATACAAAAATATCCAAGATACTAGTTATATATTCAGGAACAGATCAAGAAGTAATAGGTTGAAACAATTGTTAAGAAGAGGAGATACATTAGAGGATTTGTGTAAATTATTGTGTAAGCCAGTTATTGTGAATGTTACAAAATTATCAGTATCAGAGATAAAACAATGGTGTAAAAAAGACTTGCATCAATCTAAAGCAGAAAATATATTAACACAGAAAAAAAAATTTAAACCAAGGATACCACGAACAAGATTCTGTGAAAGGAAGACAAAGTCCAAGCAGAAGCAGTTATCTTGCTTATGTAATTCTACAAATGAAGTTAAACCTCAAAATATGTTATTTTCCAAGAAAGCAGAGATTGAAAACAAGAATTGTATAAAAAATTTATTAGAAGATGTTAAACAACCACATATAAAATTACAAAGAATAGATGAAGTAATCAATAAAATAGCACAGTCATTTGCAAGAGTAACTCCGATTAAAGAATGTGAAACAATTATTCAAACAGAAAGTGGAACAAATATTCAATCTGAATGCGAAACAAATATTCAAACAAGACGTGAAACAAGTGTTCAAAGAAGATGTGACACAAGTATTCAAACAGAAGAAACTCAAACTGAATTAAGTATACCTGCACCAGAACAACTAAAATTATCATCTGTAAATATCGATACAGATAAATATCAACAAAATCTTAAAACTGTGACAATAGCAATTAGGTCTCATGCAAATGAGACTCTACAATTGAATAAATGTGCAGATTCAGATTCAGATTCAGATTCAGATTCAGATTTTAATACTAATTCTGATTTTAAATCTAATTCTGATTCTGATTCTAATACTAGAAATTCTAGAAATACTAATGAAAGGAGACATAGAATTATATATAATTCTCATACAGATGATAATAATCATTACAATAAGAGCAATGCTAATAATGCAAGAATAATTTCGAATAAATTAAAGAGGTCAAGGAGAAATTCATCAAAAAGAATAAGCAAAATTAACCTAGTAAATGAAAAATACAATATTAAGAAAAGATGTACAGATAAAAATTCATTGTTTCAAGCATCACAAAGACCAAGTATATTAGACCGTATATCTGCGTTATGTGATCCTGATGATGATGATGATGAAAGTACTAAAGAAGGTAATACTTCCAGTTGTGTGCCTTCAAAATTAAATCTTGAATGTATTATAAAAGATGGTACTTCTGTAAAAGGAAAGAATGAAGATGCTATGACTATAGAGAAACCAATTGTAGAAAACAATAAGATTGAAGAACAAATACAAGAATTATTTCCTTCTGATAGAAATTTTATACAAAGATATAAATTGTTTAAAGAATTAAAAGTTTTTTTAATAAAATTTGATGTTATGAAAGACTCCAAAACTACATATTCAGTAACTGAAATTGAGAAAATGACAGAAAGATTTACGAATTCTTATGTGAATTTAAATTCTTCAAAACTTCAAAACAGTAACGAAAAATCTATAAATAATGCATCATTTATTTCAATCTTTTCAAAAGATTCTAATGTTAACATTGAGAAATCTACAGATGCTACAAAACATGTTTCAAGCTCAAGTATTGATAGCATTCCAAATAAAAATGTTTATACAACTACCAAAAGAACACAAAGCACAAAATTATTATCAAATTCTTCAGAAAAATTACCTCCAAATTTAATCAGAAATGCAAAGATACAACAAGAGAGAAGTTCACAAATTCAAAAAGTTTGTCATAATTTAACAAAAAGTTTTGAAGACAGTTCTAAAAAAAGGTTTGCACAGAATACTATTAGTAATGCAAAGCAGAAATTGATTGTTCCAATCCCTACTATGACATCTACATTATTATATTCTTCACAAAAATCTACCAATAAAAATTTTGAATTATCAAATGTGGTAGAAAACATTGATAATATAGACAAATCTACTGGTAAAACCTTCTCTTTAAAGAAAAAGATACCAGAGATTTCTTCACCTAAGGAGAATTCTATGAAATTGGTTATTGATGAAAGATCTCAAGAACAAGTGGGAGTTGATACATCTGGTGTTACTAATTTCAAATTGCATCTTTCAAAGAAAAATAAAAAACATGAGTCAGAGAAAAATACATTTGCACCTAAAACATGTGGAAAAACTACCAATGTTACAACTACTAAAATAGCTACAAAGAAAAGTGCTTCAAATTCCTATTCTTCCATAGTATCTCCTAAAAAATATAAGAGACTTAGAAATAATCATGGTTATAAATGTATTGTTTGTGATCTTTGTTTTGAAGATTATTCTGATTTACAACAACACCTAATTACACATACACAAAAGCAAAATAATAGTTTAGTAAATTCATTGAAAACTTCCAATATGTCACCTGAAAAATCTGTGTCAAGTGAGCACAAGAGTGGAGAACATACAGCATCACAATATGTCACCAAGAAAGATAATGGACAACAAAAGAAAAAAGATGCTATAACAAAAAACTCACTGAGTAAAGAAAAGAGGAAAAGGAGGATTAAGCATATTAGTAATTCAAATAAGTGTAGCATTTGTTCAAAATCTTTTGAAGCAATGGCTGATTTGGCAGCTCATATCTTCTTACATACAGAGAAAGAATTGCAACAAGCATATAAACTCGCAAAAAAAAAATTGAATGGAACAGAAAAATATAAACAAACTAGAACTGAACAAACAGCTAACAGTATTAAAAATGTAAATAGCACTGTAAATATTGAAGATAATATAATTGAAAGGATTCAGAAAGTTAATGATAAGGAAAAAACATTGCTTATACAGAAACCAAATAAATCATTAATTACAGAAGATTCAGAAATTAGAGACACAGAATCTATTACTATGAAAGAAAACTATTCGCAAGATATAGAATTATGTCTGCCAGCAAAATCGAAAAAAGATGGTAATAAAAAATCGTTCACAGTATGCGAATGTCATAATAAACCAGGAACTAATGAAAATTGTTTGCAAATCGAAATAGTTCTTCTTTGTCACACTTGCAGGGTGCTATTTAGAAGTATGAAATGTTTCGAAAGCCATTATTGTCTTCCCCAATATGTAGAATGTAATCAAAACCACTTAACTAGTGGTCGTTCTCCAAATTTATTCTGCGCTACCTGTGGTATGATATTTGGTTCAGTTCAAGATGTGCGCCATCATTTAGAAATACATGCTCGTTTTAAAAAAGACTGTACAATGGATTTTCGATGCAACATTTGCAAGGTTATATTTCTAGGAATAGGAAGCCTTTTTTATATCCATTGGTCAAAGCATTCCAGAGATTCTTTGTGGATGGCTAGTGAGAAATCGTTTCCAAAAGATTCCATAATAAACTCGAAGCTGAGAAAGACAGAGAATTCTACACAAAATGCAATGACTTTGAGTACGTGTGTAGAAAAATACATTGAAGTAGCAGAACATGTCTGTTATAATTGTAAACTGCCTTTTATTACTCAAGATGATTTAAAGAATCATATTTCAGAATGTAGAAAATTTATGTCAGTTCAAAATGCACCTATTGTAGAAAACTCTAATACATATCTCGCAATAAGGATAACTTGTAATTTATGTGATGATACTTTTATTAACAAAAAAACAGAATTTTATAAACATATGAAAGATAAACATAATTTGAGTACCGAACCTCGATTTATTTGTACATCATTCACGGCTGGAAATATGGTATTTATTTGCAGTGTCTGCACGGTAATGACTAAAAGTTTAGATGACTTTGAGGATCATTGGTTGAAACATAATACAACTCATGTATATTTTACTTGTTCGCATTGTAGTAAAATATATTACAACAGCTTAAATTCCTTCGTAGACCATGCTAAAAAACATGGTATTGATACAAATGATATAGTGTCCTGTGTAGTAAGTTATGAACAAACAAAATTCAGTTGTAAATTTTGTAATATTGGTTTTGATTCTCCTCAAAGTATGGAGGAGCATGCTATTATTCATAACACAAACAGCCAACAGATAAGTCCTAAGATTAGTCAAGTTACAAATCAAGACAGCTCTGCAACAGTATCAGAGACAGATTGTGCTTCCAATTTTGCAAAGTTGGTTGAATTGACTATTGAAAAGCAGATAGATGGATCATTACAAATGGAGACTCAAACAATGGAAAAGGCAAGCGAAATTTGTCCAATAGAATCTAGTATAGACAAAAGTAGGGATAAATTAATCAAGATATTAGAAGGAAATGAAGATGATTCTGAACATGAATTAATAATAGATTTGACAAAACAATCAGAAGAATGTAATGAAGGATTAAAAGAAGAAGGAAGTAAGGAAAAACAGACTATATCTAATTTTACATTAGATAAATCTTCTATCAATCAAACTTGTGTCACGTCAGAGAATGATAAAGCTAATGCATTGGTAACAAATGTAAATATCCAAGTATCTTCACAAAATGTTGCAAAATTTAAAACTCAAAATGTTACAGATTCTCTTTTTACTGCTAAAAACATAAATCCTAAAATATCTAATTCAAACATTAAGTCTACAAATATTTTGCAAACAAACAATGTTAGTAATCATAATAATCTATTAGATATAGAAAAAGAAACAACAAGTGACCAATCAATCACAAAAGATATAGAAAGTACACAAAATGTTGAAGTTCATGACAGAATTTCAATTATAAATCAAGAAGAATCAACAATTTTAACAAAAGAAACATCAGAGAAACAAAGTCCACCAAGACCAAAACAAGGGTTCTTAAGAGTAAAGACTCTTGCAGAGCTTACAGGTTCTGCAAATTTATGTGAACTTAGCAATTCTGCTGTTGAAAATGCTAATGAATTAGCCAAGCACTTCAAAAGTCACCATGCTTCGAACAAAGATAATAATGAACACAAAACTACAGAAAAAGAATTAGTTTCAAAACAATCTGAAACCAACAAATTTATTGCTAATAAAAAATTAAAAATTGTTTCTAATACAAATTCAAATACATTACTATTATCTTCATATAATTCAGGCAATATAAAATTAGTGATTCAGAAACCAGTTATGAAATCTAATACTAAAGTAATAAATAATCAGCAACCACAGCAATTCCAAATAAATACAAATCAAAAGGAACACTCATCTTCTCTGGGAAATATAACATCAATATATCATAAAAACTTACCAACTTGCAATTTCGTTCAAACAACCACAGCTATGCCACGTTTTACTATTTTGAAACCTACCAAAGTAATAGCACATACTGCTAATATACAGAATTTACAGAGAACACATGTAGCATCTTGTTCTACCAATGAAAATAAACAAAAGTCTTCATTTGCAAACAAGACTTTAAATCATACTGTACATAAGTGTAATCATTGCAATTTTGTTTCAAGTAATTCTGCAGAATTCTTAATGCACAATTTACTAGGTAATCATTCAACTTGTAAGAAGCAATATTTGCAAAATGACACCCAAGCACAAGAACTTAACAAATTTGATAATTCACAAACAATACCCACAATTAATACTATTAAAAACAATCCAAAGCCCAAACGACGTCAACAAACTACTATGAAGCAACCAGGAATTGACTATGCGTCTTCATCTGTCCATGATCAATATTCTTATCTTGCTGCAGGCACTTCGAATAATAATAATCAAATACTTAAACAAAATCAACAAATAATAACTAATCATCCAATAACAGAAAATATCACCCCTATTTATTATAAGACTCCAAATACAAGCAGTGGTGGAATGTCAATAGTGATCAATCAAACTACACCTACTGTTCAGAATATACCCACAATAGGAATCCTGCAACAACCAATGCAGCAACGAATATATCAACAACAGGATTTAGTTCAATTTTCCGAATCGAATGCTGTTTTTCAACTGGCAAATCAACCAAGTGTTACAACTTATCAAGTTAGATATGTATGTTCTTATTGTTCGAAAAGTTTTGTTTCTGAAGATTATATGCAGATACATATAAATGAGCAACACAATTTTATATGTGATGTTTGTAGTTTGCGTTTATACAGTTTTAACGATTTAAATCTTCATAAAATTCAGCATAGTTTGTTGTAA
- Protein Sequence
- MEISNEELFSSRHSVDNYSEQVINMPLPLPKPKPKGTNAKYKNIQDTSYIFRNRSRSNRLKQLLRRGDTLEDLCKLLCKPVIVNVTKLSVSEIKQWCKKDLHQSKAENILTQKKKFKPRIPRTRFCERKTKSKQKQLSCLCNSTNEVKPQNMLFSKKAEIENKNCIKNLLEDVKQPHIKLQRIDEVINKIAQSFARVTPIKECETIIQTESGTNIQSECETNIQTRRETSVQRRCDTSIQTEETQTELSIPAPEQLKLSSVNIDTDKYQQNLKTVTIAIRSHANETLQLNKCADSDSDSDSDSDFNTNSDFKSNSDSDSNTRNSRNTNERRHRIIYNSHTDDNNHYNKSNANNARIISNKLKRSRRNSSKRISKINLVNEKYNIKKRCTDKNSLFQASQRPSILDRISALCDPDDDDDESTKEGNTSSCVPSKLNLECIIKDGTSVKGKNEDAMTIEKPIVENNKIEEQIQELFPSDRNFIQRYKLFKELKVFLIKFDVMKDSKTTYSVTEIEKMTERFTNSYVNLNSSKLQNSNEKSINNASFISIFSKDSNVNIEKSTDATKHVSSSSIDSIPNKNVYTTTKRTQSTKLLSNSSEKLPPNLIRNAKIQQERSSQIQKVCHNLTKSFEDSSKKRFAQNTISNAKQKLIVPIPTMTSTLLYSSQKSTNKNFELSNVVENIDNIDKSTGKTFSLKKKIPEISSPKENSMKLVIDERSQEQVGVDTSGVTNFKLHLSKKNKKHESEKNTFAPKTCGKTTNVTTTKIATKKSASNSYSSIVSPKKYKRLRNNHGYKCIVCDLCFEDYSDLQQHLITHTQKQNNSLVNSLKTSNMSPEKSVSSEHKSGEHTASQYVTKKDNGQQKKKDAITKNSLSKEKRKRRIKHISNSNKCSICSKSFEAMADLAAHIFLHTEKELQQAYKLAKKKLNGTEKYKQTRTEQTANSIKNVNSTVNIEDNIIERIQKVNDKEKTLLIQKPNKSLITEDSEIRDTESITMKENYSQDIELCLPAKSKKDGNKKSFTVCECHNKPGTNENCLQIEIVLLCHTCRVLFRSMKCFESHYCLPQYVECNQNHLTSGRSPNLFCATCGMIFGSVQDVRHHLEIHARFKKDCTMDFRCNICKVIFLGIGSLFYIHWSKHSRDSLWMASEKSFPKDSIINSKLRKTENSTQNAMTLSTCVEKYIEVAEHVCYNCKLPFITQDDLKNHISECRKFMSVQNAPIVENSNTYLAIRITCNLCDDTFINKKTEFYKHMKDKHNLSTEPRFICTSFTAGNMVFICSVCTVMTKSLDDFEDHWLKHNTTHVYFTCSHCSKIYYNSLNSFVDHAKKHGIDTNDIVSCVVSYEQTKFSCKFCNIGFDSPQSMEEHAIIHNTNSQQISPKISQVTNQDSSATVSETDCASNFAKLVELTIEKQIDGSLQMETQTMEKASEICPIESSIDKSRDKLIKILEGNEDDSEHELIIDLTKQSEECNEGLKEEGSKEKQTISNFTLDKSSINQTCVTSENDKANALVTNVNIQVSSQNVAKFKTQNVTDSLFTAKNINPKISNSNIKSTNILQTNNVSNHNNLLDIEKETTSDQSITKDIESTQNVEVHDRISIINQEESTILTKETSEKQSPPRPKQGFLRVKTLAELTGSANLCELSNSAVENANELAKHFKSHHASNKDNNEHKTTEKELVSKQSETNKFIANKKLKIVSNTNSNTLLLSSYNSGNIKLVIQKPVMKSNTKVINNQQPQQFQINTNQKEHSSSLGNITSIYHKNLPTCNFVQTTTAMPRFTILKPTKVIAHTANIQNLQRTHVASCSTNENKQKSSFANKTLNHTVHKCNHCNFVSSNSAEFLMHNLLGNHSTCKKQYLQNDTQAQELNKFDNSQTIPTINTIKNNPKPKRRQQTTMKQPGIDYASSSVHDQYSYLAAGTSNNNNQILKQNQQIITNHPITENITPIYYKTPNTSSGGMSIVINQTTPTVQNIPTIGILQQPMQQRIYQQQDLVQFSESNAVFQLANQPSVTTYQVRYVCSYCSKSFVSEDYMQIHINEQHNFICDVCSLRLYSFNDLNLHKIQHSLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218063;
- 90% Identity
- iTF_00219387;
- 80% Identity
- -