Basic Information

Insect: Bombus skorikovi
Gene Symbol: ush
Assembly: GCA_014737355.1
Location: JACXIH010000034.1:2509927-2516883[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0061 0.56 10.9 0.1 3 20 277 294 275 296 0.92

2 8 3.8e-05 0.0035 17.8 1.3 1 23 326 348 326 348 0.98

3 8 0.086 8 7.3 1.6 3 20 387 404 386 406 0.93

4 8 0.013 1.2 9.9 4.4 2 21 622 641 621 642 0.94

5 8 0.06 5.6 7.8 0.0 3 20 670 687 668 689 0.91

6 8 0.015 1.4 9.7 0.0 2 23 728 749 727 749 0.95

7 8 0.019 1.7 9.4 1.5 1 23 755 777 755 777 0.98

8 8 0.084 7.8 7.3 0.5 3 21 872 890 871 891 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0061	0.56	10.9	0.1	3	20	277	294	275	296	0.92
2	8	3.8e-05	0.0035	17.8	1.3	1	23	326	348	326	348	0.98
3	8	0.086	8	7.3	1.6	3	20	387	404	386	406	0.93
4	8	0.013	1.2	9.9	4.4	2	21	622	641	621	642	0.94
5	8	0.06	5.6	7.8	0.0	3	20	670	687	668	689	0.91
6	8	0.015	1.4	9.7	0.0	2	23	728	749	727	749	0.95
7	8	0.019	1.7	9.4	1.5	1	23	755	777	755	777	0.98
8	8	0.084	7.8	7.3	0.5	3	21	872	890	871	891	0.92

Sequence Information

Coding Sequence: ATGGTCGAAGCCGGTAACGAGAATGAAAGGCAGATAGAGGCGACTGGACGACCGTTTGCGGGTTTAATAGTTCGCTTCGTGGGACATCGGGAGGATGAGGAATGGAGCGACTCGGAGAAGACACCATCGGTGAGCAGCGGAGTGGAAGGCGGCGGATCGGCGGTTTCCAGCCCGATCGCGCCGGTCGTCGAGGAGGAATCGAGTTTACCGCCACCACCGAGACTGAATCCCCCTTCCTCGTCCGTTGCGATCGCGAATTCGGCCGCTGAGGATATCAGATTGAGGCTCAGCGTGCTCCCCGAAGACGCTCGGAAACGACTGGCTAGTCTTACCGAAGATATCGAGGTTGCAAGAAGCTTAAGAGATCGACATGTCACCCCGAGATCCAATCAGACGCGAGAATCGAGTCCGAAAGACACGGACGAAGAGTCCAATCTGGTCATGGTCAAAGAAGAGGACTGTCAACCGAGATCGTCGTCCTCTTCGTCGTCCTCGACAAGAAGACGGGAATCCATGTGCAGGCGAGACTCGGAGGACTCGTCGAGACGATCGAATACGGACGATCCACCGACCGAGAAAAAGTTGAAACTCGACGATGAAGCTGCACCAAGACTGAGACTCAATCCTAGTCTGGCGACGGATCCAGCCCTTCGGCCCGCCGCCGTAGTCGCGCTCACCGTCAAACCGGAAAATACCTCGCCACCGAATCCTGTGCCACCCCTTCCGGCTGGACTTCAAAATGCAATCGCCTCAGGTCGTTTGTTCGTACTTCCAACCGATGGCAAGGAGACGATCACTGTGGAACCAGCCAGGCCAGCACCTCTCTTCTGTCCTCCATGCGGCATCCGTTTTAGCTCAGCGAGCACCCTCGAAGCGCATCGCACTTTCTACTGCGCTCATCGTCCCCGACTCGAGGAAGACACCGCCAACGAAGAGGACGAGGAAAAGTCCAACAAATTCGAAGTGAGAAAAGCGTATGCCTGCCCTCACTGCTCGTACAGCGCGGACAAGAAGGTCTCGTTGAACAGACACATGAGAATGCATGCTGCATCTCCTGCACCACCCACGATACCAACCGCTCCGACTACAGCTACTACTCCAGGAAGTGGCGCGGCAAATGCCTCGAATGGCTCCTTGAACGAAGAGGCGGAGAGATATTGCAGAAACTGCGATATTCGATTCAGCTCCCTGAAGACTTATAGAGCGCACAAGACGCATTATTGTAGTACTAGGCACGTGGTCAAAGATACGCCACCAGCAGCTACGGTAGCTTCCTCGTCGGTGAAAGCTTCGCCACCGACGAGCGCGAGTCCCGGTGAATCGCCGCCTCCGCAACCTTGTCTGGCGCTACCTACAAATCCTATTTTGATCGTACCGTACTCTTTGTTCCGAGGTGCTAGTGTCCTGGCAGCACCCACTTTGCCCGCGCCTGATACCGCGTGCTTTCTTCTTCCAAATGGTCATCTTCAACCGATGACAAGAGGTCTGGCTACCACAGCGCAGAACACCGTGGTCGAACCTTCACCGGTTCTCCGAGCAGCGAACAAACCAACGACACCAGCGTCCGTCGTGGCATCGTCGACGTCGCCATCAGGTTCAGCGCCACTCGATTTGAGCGTTAGAAAGTCACCAGCTCATCAAGATGAAAAAGAGAACAGGGTATCGCCGGCGCCCTCTTCTCTACCTCCACCACCTGGTAGTCCTAGGTCAAGAGGAAGCGGAAGTCCTAGAGCAAGGTCCATTGGTTCTGCTCCTACGGCTACTGGAACCGTTGCACCTCCTCCGCCGACGGAACTCGCTCTCAGACTGGCTGAACTTCCACCGCCCCCTGTTCCTGGGGTTCTTGTGAAACAAGGTGTCTCGAGATGCAAAGAATGTAATATCGTGTTCTGTCGGCATGAGAACTTCGTCGCACATAAAAAGCATTATTGTCAGGCAAGAGAGACAACGGTCAGCAATAGTCCTCCACCACCTGGGACACCCTCGCCTCCTTTAGTGCAATTAATCTGTGCCGCGTGTGGCATCAAGTTCGCATCTATGGATAATCTGGTAGCTCATCAAGCGTTTTACTGTCCCAAAAGGCCAGAACCTCAGGAACATCATTCGCGATGCTCCAAGTGCAAAACTATAATTGAACCTGGAGGTACCCATACCTGTAGCAGCGGACCGACTGGAGGTTGGAGATGTCCCGTTTGTGGTGCGGTTAGTCCAACAGCCGGAGCAGCTCAGCGTCACATGGATGCTCATCAGGGTGTCAAGGCTTTCAGGTGTACGATCTGTCGTTACAAAGGAAACACGTTACGGGGAATGAGAACGCACATCAAAATGCACTTTGAGAAACGTGGAACCGATCTACAGGAGGAAAACTACATAACGTGCGTACTCGACGACGAAACGATTCTGCCGACTCCAGAACCGGCTCCAGCTACGACTCCTGAAGAAATCCCTGGCGAGGTGCAAGTAAATGGGAAAACCGAAGTTCGGAAGAGTCCTCAGCCACCTCCACCGCCACCGCCGCCACCACCGACGGTAACCAACAAGGTGAAGCAAGAACGCGAGGACACTCCACCTCCCGAAGAAAGTTTGGATCCCAACAAAAGCGGTCCGCGTTACTGCAGGTCGTGCGACATCAGCTTCAATTACTTGAGCACGTTCATTGCTCACAAGAAGTTCTATTGCTCGAGTCATGCCGGCGAGGCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCCCAGCAACAGAACCGAGGCGTCGGTACTTTAA
Protein Sequence: MVEAGNENERQIEATGRPFAGLIVRFVGHREDEEWSDSEKTPSVSSGVEGGGSAVSSPIAPVVEEESSLPPPPRLNPPSSSVAIANSAAEDIRLRLSVLPEDARKRLASLTEDIEVARSLRDRHVTPRSNQTRESSPKDTDEESNLVMVKEEDCQPRSSSSSSSSTRRRESMCRRDSEDSSRRSNTDDPPTEKKLKLDDEAAPRLRLNPSLATDPALRPAAVVALTVKPENTSPPNPVPPLPAGLQNAIASGRLFVLPTDGKETITVEPARPAPLFCPPCGIRFSSASTLEAHRTFYCAHRPRLEEDTANEEDEEKSNKFEVRKAYACPHCSYSADKKVSLNRHMRMHAASPAPPTIPTAPTTATTPGSGAANASNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPPAATVASSSVKASPPTSASPGESPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPAPDTACFLLPNGHLQPMTRGLATTAQNTVVEPSPVLRAANKPTTPASVVASSTSPSGSAPLDLSVRKSPAHQDEKENRVSPAPSSLPPPPGSPRSRGSGSPRARSIGSAPTATGTVAPPPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARETTVSNSPPPPGTPSPPLVQLICAACGIKFASMDNLVAHQAFYCPKRPEPQEHHSRCSKCKTIIEPGGTHTCSSGPTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIKMHFEKRGTDLQEENYITCVLDDETILPTPEPAPATTPEEIPGEVQVNGKTEVRKSPQPPPPPPPPPPTVTNKVKQEREDTPPPEESLDPNKSGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASXXXXXXXXXXXXXXXXXPPSNRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983220;
90% Identity: iTF_00964084;
80% Identity: -