Basic Information

Insect: Bombus skorikovi
Gene Symbol: Snai1
Assembly: GCA_014737355.1
Location: JACXIH010000073.1:119391-122113[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0041 0.38 11.4 0.2 1 23 97 119 97 119 0.95

2 11 1e-05 0.00095 19.6 1.2 1 23 127 149 127 149 0.98

3 11 4.1e-06 0.00038 20.9 0.2 2 23 157 178 156 178 0.97

4 11 1.2e-06 0.00011 22.6 0.7 1 23 184 206 184 206 0.99

5 11 3e-06 0.00028 21.3 0.6 1 23 241 263 241 263 0.96

6 11 7.7e-06 0.00071 20.0 0.1 1 23 269 291 269 291 0.98

7 11 4.3e-07 4e-05 24.0 1.2 1 23 297 320 297 320 0.96

8 11 2.3e-06 0.00021 21.7 0.5 1 23 326 349 326 349 0.96

9 11 8.4e-07 7.8e-05 23.0 2.1 1 23 355 377 355 377 0.99

10 11 5.6e-05 0.0051 17.3 0.4 1 23 383 405 383 405 0.94

11 11 0.00017 0.016 15.8 0.1 1 23 411 435 411 435 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0041	0.38	11.4	0.2	1	23	97	119	97	119	0.95
2	11	1e-05	0.00095	19.6	1.2	1	23	127	149	127	149	0.98
3	11	4.1e-06	0.00038	20.9	0.2	2	23	157	178	156	178	0.97
4	11	1.2e-06	0.00011	22.6	0.7	1	23	184	206	184	206	0.99
5	11	3e-06	0.00028	21.3	0.6	1	23	241	263	241	263	0.96
6	11	7.7e-06	0.00071	20.0	0.1	1	23	269	291	269	291	0.98
7	11	4.3e-07	4e-05	24.0	1.2	1	23	297	320	297	320	0.96
8	11	2.3e-06	0.00021	21.7	0.5	1	23	326	349	326	349	0.96
9	11	8.4e-07	7.8e-05	23.0	2.1	1	23	355	377	355	377	0.99
10	11	5.6e-05	0.0051	17.3	0.4	1	23	383	405	383	405	0.94
11	11	0.00017	0.016	15.8	0.1	1	23	411	435	411	435	0.94

Sequence Information

Coding Sequence: ATGGAAGGGGAAGAAGAAAGAATAGAGGAAGAAGAAGGGGTACCTTCTTGTGAACCAGAGGAAATTATTCTGAAAGTTGAGGCCATACCAGATACAAGCGGTAGTGAAGAAAGAAAGAGGATAAAACGAGCAAAAATTACACCAAAAGTTGAACCTCCTCAAGAGCGAATTGTTACTAGAGATGGCTCTATATATAGCTGTTTGTTATGTACAAATGAAGACGACAAAGCTGTAGGAGATGCAAAGTCTATTATCGCTCATGTAAGGAGTGTGCACGAAACTCGTTTATATATTTGCGACATATGCGGGGATGACTTTAAAAAGAGAAATCAACTATCTATTCATCTTGATGATCATGTTGCTAAAGAGGAAGGGGATTTTCAGTGTGAAATATGTAATAGAATATTTAGTAATTTGCGGTTGTTTAGGATTCATAAAAGAATACATTATCCGCAAGTGAAATCTTGGCCGTGTGAAACTTGTGGTAAACGATACAGTTCCAGAAATCTATTGGAGGAACATATTAATACACATACAGGCGTACGTCCATATGTATGCGAAAATTGTGGTAAAGATTTTGCTTCAAAATATACTTATAAAGCACACGTAAAAACACATGAAATACGACCTCGTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGTAAAGGAGTATGTTTGCCACCAGTGCGGGAAAGCCTTTGGTTCGCCACATAATTTAGAAGTACACAATATAGTACATACTGGTTACAAACCATACATATGTAGAGTATGTGGTAAAGCATTTGCCCGTAAAGCTGAAATAAGGGACCATGAAAGGACACATACTGGAGAGAAACCATATCAGTGTGAATTTTGTGGAGCTACATTTAGCCAACGATCGAATTTACAATCGCACAAGCGTGCAACGCATTATAATGATAAACGGTACAAATGTGACGATTGTGGAAAAGGATTTAAACGGCGGAGATTATTAGACTATCATATAAAAGCAGCTCATACCGGTGAAAGACCGTACAAATGCGATATATGTACAGCAACATTTGTATATCCCGAACATTTCAAAAAACATATGCGTATACATACTGGAGAGAAACCTTATCTCTGCGAGGTTTGTGGTAAAGCATTTAATAGTCGAGATAATAGAAATGCGCATCGGTTTATACACAGTGATAAAAAGCCGTATGAATGTCTAGTATGTGGTATGGGTTTTATGAGAAAACCTTTGTTGTATGCTCATATGCAGACTCAGGGACACTTAAATGATACCATTGTGGTGAATCAACCGCGTCTCACTACGGAAGATGATCAAGTTATAACAATTTCTGATGGCAACGTGGAACTTTTAGTAGATGAAGCGGAGAATGACCAGTTGGATGAAACTGAATTGTATGTGACAGAGTTAAAAGATCATGTTATCATACAGCAGCAAAATGAGGATCAAATGTATAACGAAGAAGATGTATTAAATATTCCGGCAGAGGAAAATGTTGCGGACGAAGAAGTAAATCGTCTCGTTGATGGAGAAATGAATTTCGTTGAAAACGAAGTAATGGAATGTAAAACTGAAGATTCGGAGCAAGTAGAAGAGGTATACAACTATAATGAAACGGAAGATGGGGAAACAATAGTTGTACCAACTACCTCAGAGTACAAAGAAGCGGAAGAAGAGAAAAATGCTGTACGATTAGTACAAATTCGATTTCCAACATCGGTTGGTGGTGAAGGCCGAAGTTGGTTAAGCTTAGTACAAAACACGTGA
Protein Sequence: MEGEEERIEEEEGVPSCEPEEIILKVEAIPDTSGSEERKRIKRAKITPKVEPPQERIVTRDGSIYSCLLCTNEDDKAVGDAKSIIAHVRSVHETRLYICDICGDDFKKRNQLSIHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHVKTHEIRPRPXXXXXXXXXXXXXXXXXXXXXXXXGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITISDGNVELLVDEAENDQLDETELYVTELKDHVIIQQQNEDQMYNEEDVLNIPAEENVADEEVNRLVDGEMNFVENEVMECKTEDSEQVEEVYNYNETEDGETIVVPTTSEYKEAEEEKNAVRLVQIRFPTSVGGEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00230172;
80% Identity: -