Bsko018839.1
Basic Information
- Insect
- Bombus skorikovi
- Gene Symbol
- -
- Assembly
- GCA_014737355.1
- Location
- JACXIH010000047.1:835124-839061[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.01 0.92 10.2 0.0 1 20 57 76 57 78 0.95 2 19 0.047 4.3 8.1 2.3 1 21 95 115 95 116 0.96 3 19 0.00011 0.011 16.3 3.0 2 23 151 172 150 172 0.94 4 19 0.00016 0.015 15.8 2.2 1 23 176 198 176 198 0.97 5 19 0.00015 0.014 15.9 0.6 3 23 206 226 205 226 0.97 6 19 2.8e-05 0.0026 18.3 3.6 2 23 233 254 232 254 0.96 7 19 0.099 9.1 7.1 2.5 1 19 263 285 263 287 0.73 8 19 0.15 14 6.5 0.2 3 23 293 312 292 312 0.95 9 19 0.41 38 5.1 2.3 3 13 320 330 319 333 0.89 10 19 0.038 3.5 8.4 2.4 1 23 422 444 422 444 0.97 11 19 3.7e-06 0.00034 21.0 1.1 3 23 455 476 454 476 0.96 12 19 0.00013 0.012 16.2 4.9 1 23 482 504 482 504 0.98 13 19 0.032 2.9 8.7 0.4 1 23 508 530 508 530 0.97 14 19 4e-06 0.00037 20.9 1.5 3 23 538 558 536 558 0.97 15 19 1.1e-05 0.0011 19.5 0.2 1 23 564 586 564 586 0.98 16 19 0.071 6.5 7.5 0.9 1 23 592 614 592 614 0.97 17 19 3.4e-07 3.2e-05 24.3 0.1 2 23 621 642 620 642 0.97 18 19 6.1e-07 5.6e-05 23.5 0.6 1 23 648 670 648 670 0.98 19 19 1.1e-07 1e-05 25.8 1.9 1 23 676 698 676 698 0.99
Sequence Information
- Coding Sequence
- ATGCTTTTCATGGCTAAAACAGATTTAGCTTTGAAGATAAAACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCGTCCAACGAGGAAGCTCGATCGTTTGTGAACAAAGTGATCGATAACTCACACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTTGACACGGAGGCTGCTCTGTTGGTACACAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTGAAAAGAAATACACGTGTGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGCGAAGGACAAAACGATAAAAACGAAACGAAAGGAACCGAATGTTTCTACTGGTCCGATCGAGTGCAACGTGTGTCATAAAGTTTTTAAGAAGAAGAAATATCTAAATGTTCATAAAACGTTGCATGGAGCGCCTCATATTTGTCACGTATGCGGTGCCAAATTGACTTCTGAATATTATTTGAAGATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAGGTGTGTAACAAAGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAATGATAAACCGTGCATTTGTGACGTTTGTCACAAGTCTTTCGGTAATAGAGTTTATTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAAAATAGGAGGAAGTACAGATGCGAAATTTGTGGCTTCGAGACTTTCTACAGTTACTGTTATAAGGAACATCTGTGGACGCATACGGGAGAAAGTCAGGTGGCTTGTGAGGTTTGCGGTAAATTGATCAGGAGGCAGTATATGAAGATTCATATTAGAATACACACTGGTGAGAAACCGGAGATCTGTGAATTTTGCGGCAAAGCATTTAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTCAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAAATAGTAACGGACACGTTAGAAGAAAGTAACGACGCTGAGATGAAACTGATTCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAGGGAACGTTAACATAGATTATAACAATAAATACGAGAGCAGAAAATGCTCGGTCATCTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAGAAGCTTCAATTTCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCATTGCGAGGAATGTGATAAAAGTTTCGCGGATGAAGAGAAATTGAAGAAACACATGATCAAAGTGCACCAAAAGGAGAAGCCTTTTCAATGTGTTCTCTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACCTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCGTTTACATAAAAAGAAACATAACGAGGAATATGTGACGCACTGTGAAATCTGCGGCAAAGGCTTCTACACGAACCAAACCCTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGCAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCATATGAAGTCTCACGGCGAACGAGAGAAACACAAGTGCAATATTTGTAATTTCGAAAGTTACTGGAAGGCGGCTCTAAAGGTGCACCTTAAGATACACACTGGAGAGAACCTGATCACCTGTGAGATATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATTCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTAGAAAATATCTAATTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAGTGTAAAGTATGTCAGAAAAGGTTCACGCAGCAGGGTTCACTGAATTCGCATATGAAGTCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MLFMAKTDLALKIKPKSVKTIPAKRNQSRTAKSSNEEARSFVNKVIDNSHVVQEASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKEPNVSTGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSNDKPCICDVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESNDAEMKLILEEEEEEEEEETGNVNIDYNNKYESRKCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEETGGHCEECDKSFADEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -