Bsko001538.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus skorikovi
Gene Symbol
dis3l2
Assembly
GCA_014737355.1
Location
JACXIH010000075.1:472399-475334[-]

Transcription Factor Domain

TF Family
CSD
Domain
CSD domain
PFAM
PF00313
TF Group
Beta-Scaffold Factors
Description
In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.0043 43 4.4 0.0 14 38 125 149 120 166 0.78
2 2 7.3e-08 0.00072 19.7 0.1 30 70 218 258 214 260 0.93

Sequence Information

Coding Sequence
ATGTCAGAAAAATCAGTTTCTCCAGATTTAGTTAGACAAAATCAGCCTAGAAATGTTAAAAAATTTCATCACAAGGTTAGTAAAAACAAAAATAAAAAAATATCTAAGAGGGAAACTTTTAACGAACAACCAGTGGTTGATGATGAAAAGGGAAAGGAAGAGGAAAATAAAGAAGAAATCAAAGCTCAGAAAGCTAAAGTCCCACAACAAAAAGATACATTCCCACAACATATTCCTGAAAAACAAATTGACAAACTTTTAAGAAATGAAAATTCCAGTGAAACACAATATGTAGAAGGGCAGTTACGTGTCAATCCCTGGTGTCGTGAATATGCTTATTTATCTTTCTCTGATGATCAATGTGATCTATTAATTATTGGCTTAAGGGATAGAAATCGAGCTTTTGATGGTGATTTTGTTGTAGCACGTATAAATCAGCCAGAAAAATGGAAAATGCATCAAGGATACGAGCAAAAAACAGGTGTTGTTGTTTATATACGAGAGAAAATACATCCAAGAAGAACAGTTGGATACTTCAAACAAAATGGTGATTTATTTTATCCCAGAGATCGTCGTGTACCATTAGTTAAGATAAGTAAGAAATCCTTGCAACAGTTTGGTGTGTGTCGAAATTATAAAGACATATTATATTTGGTTGTTATAACTGACTGGAAAAAGCCAAAATTTGCAGTTGGGCAAATTGAAAAAATAATTGGAAGTATTGGCGATATAAAAGCAGAATCAAATGCAATATTACTTGAATATGATTTAGATGTTACACCTTATAGTCTAGATGTAACGAAGGAGCTTCCAAGTGACTATTCTTTAACAGAAAATGATATTAAAGACAGAGAGGACTGGAAAGATGAATGCATATTTACTATTGATCCTGATACTGCTGTTGACTTAGATGACTCAGTCTCTTGCAAACCTTTGGAAAATGGAAATTATGAAGTTGGTGTGCATATATCAGATGTTACTCATTATGTGGAATTCTTATCTCCATTGGATATTCAGGTTTCAAAACGAGCTACAACTATATATATGGCAGATAACGTATATCACATGTTACCAAAAGAATTATGTCAAGTATGTTCTTTGTCACCTGGTCAGGATAAATTGGCTTTTTCTGTTATTTGGGAAATGACGCAAGATGCAAAAGTTGTTAAACATCGTTTTGCCAAAACTGTAATAAGATCATGCTGTCAAATGTCTTACCAGCATGTTCAGAAAATGATTGAAAATCCAGAATATAATTGGCCAGATAACTCTATATATATAGATGGAAATTACAAGCTTAATGATTTGTCAATAAAAGTAAACATTTTACACAATTTAGCTATTCAAATGCGTAAGAGAAGATTTCAAAATGGTGCACTACAAATAGATCAACCAAAATTATATATCAAGATTGATAGAATTACGGGTTTACCAATATCATACAATATAGAAGAACAGCAAGATAGTAACAGACTTATAGAAGAGTTTATGTTGCTAGCTAATATGACAGTTGCTACACACTTATACAATGTAATTCCGGAGACTGCTTTATTACGCAACCATAGAGAACCTTCAAAACATATTCTCAGTACAACGCAAGATATGCTGCAAAAATTTGGCGTTCATTTAGACATTAAATCATCTACATCTTTGCATGCTAGTATGAAACGTTGTGAAGAAGGATTAGAAACTGAAGACGATGAAAGAAGATTAATAACGAAATATAGGATGATGGTTATCAACAATCTTTGTTCCAGAGCAATGACTCGAGCAACCTACATATGTTCGTCTACGGTGAAAGCAGAGGAGGAATTGAGACATTATGCTTTAAACATATCGCTTTATACGCATTTTACGTCCCCAATTAGACGATATTCCGATTGTGTTGTACACCGTTTACTTTATTCAACTTTAAGAAATGTAGACATGCCTAAAGAATGGACTAAAAAACTTTGCAGATCAATAGCGGCAAATTGTAACATAAAGAAATATAATGCGAAAATAGCACAAGAGCGAAGTAACGAATTGTACTTTACGTATTTGATAGATTTAAAGGGTCCTATTGTTACATTGGGTATTGTGTTGAGTGTACATGAAAATTTTATAACTATTATATTGTGTCAACTTGGTACAAAATTAAGGGTTTCCTTCACACACTTAGAAAATTTGGCACTCGTCGAATATTCTTCGGAATGTTCCATTCCAACGATAAACATCTCTTGGAAACAATCTGCTATTACCCAGGTAATAAATGTTTTTACTTTATTGTATTTGAGAGTCGAAAAGCATCCTGAATCTTTTCAATTAATGGGTACCCTTTTACCACCGACTCAGGAAATAGAAATATAA
Protein Sequence
MSEKSVSPDLVRQNQPRNVKKFHHKVSKNKNKKISKRETFNEQPVVDDEKGKEEENKEEIKAQKAKVPQQKDTFPQHIPEKQIDKLLRNENSSETQYVEGQLRVNPWCREYAYLSFSDDQCDLLIIGLRDRNRAFDGDFVVARINQPEKWKMHQGYEQKTGVVVYIREKIHPRRTVGYFKQNGDLFYPRDRRVPLVKISKKSLQQFGVCRNYKDILYLVVITDWKKPKFAVGQIEKIIGSIGDIKAESNAILLEYDLDVTPYSLDVTKELPSDYSLTENDIKDREDWKDECIFTIDPDTAVDLDDSVSCKPLENGNYEVGVHISDVTHYVEFLSPLDIQVSKRATTIYMADNVYHMLPKELCQVCSLSPGQDKLAFSVIWEMTQDAKVVKHRFAKTVIRSCCQMSYQHVQKMIENPEYNWPDNSIYIDGNYKLNDLSIKVNILHNLAIQMRKRRFQNGALQIDQPKLYIKIDRITGLPISYNIEEQQDSNRLIEEFMLLANMTVATHLYNVIPETALLRNHREPSKHILSTTQDMLQKFGVHLDIKSSTSLHASMKRCEEGLETEDDERRLITKYRMMVINNLCSRAMTRATYICSSTVKAEEELRHYALNISLYTHFTSPIRRYSDCVVHRLLYSTLRNVDMPKEWTKKLCRSIAANCNIKKYNAKIAQERSNELYFTYLIDLKGPIVTLGIVLSVHENFITIILCQLGTKLRVSFTHLENLALVEYSSECSIPTINISWKQSAITQVINVFTLLYLRVEKHPESFQLMGTLLPPTQEIEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00216160;
90% Identity
iTF_00215478;
80% Identity
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