Bpyr018820.1
Basic Information
- Insect
- Bombus pyrosoma
- Gene Symbol
- -
- Assembly
- GCA_014825855.1
- Location
- CM026128.1:2644226-2647963[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0082 0.78 10.5 0.0 1 20 68 87 68 89 0.95 2 19 0.045 4.3 8.1 2.3 1 21 106 126 106 127 0.96 3 19 0.00015 0.014 15.9 3.1 2 23 162 183 161 183 0.94 4 19 0.00016 0.015 15.8 2.2 1 23 187 209 187 209 0.97 5 19 0.00015 0.014 15.9 0.6 3 23 217 237 216 237 0.97 6 19 1.5e-05 0.0014 19.1 3.6 2 23 244 265 243 265 0.96 7 19 0.096 9.2 7.1 2.5 1 19 274 296 274 298 0.73 8 19 0.15 14 6.5 0.2 3 23 304 323 303 323 0.95 9 19 0.4 39 5.1 2.3 3 13 331 341 330 344 0.89 10 19 0.037 3.6 8.4 2.4 1 23 429 451 429 451 0.97 11 19 3.6e-06 0.00034 21.0 1.1 3 23 462 483 461 483 0.96 12 19 0.00012 0.012 16.2 4.9 1 23 489 511 489 511 0.98 13 19 0.031 2.9 8.6 0.4 1 23 515 537 515 537 0.97 14 19 3.9e-06 0.00037 20.9 1.5 3 23 545 565 543 565 0.97 15 19 1.1e-05 0.0011 19.5 0.2 1 23 571 593 571 593 0.98 16 19 0.069 6.6 7.5 0.9 1 23 599 621 599 621 0.97 17 19 3.3e-07 3.2e-05 24.3 0.1 2 23 628 649 627 649 0.97 18 19 5.9e-07 5.7e-05 23.5 0.6 1 23 655 677 655 677 0.98 19 19 1.1e-07 1e-05 25.8 1.9 1 23 683 705 683 705 0.99
Sequence Information
- Coding Sequence
- ATGATTGATATTTTTATTAAAAAAAAAAAAAAACTGCTATCGACAAAGAAAACAGATTTAGCTTTGAAGATAAAACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCGTCCAACGAGGAAGCTCGATCGTTTGTGAACAAAGTGATCGATAACTCTCACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTCGACACGGAGGCTACTCTGTTGGTACACAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTCAAAAGAAATACACGTGTGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGTGAAGGACAAAACGATAAAAACGAAACGGAAGGAACCGAATGTTTCTAGTGGTCCAATCGAATGCACCGTGTGTCATAAAGTTTTTAAGAAGAAGAAATATCTAAATGTTCATAAAACATTGCATGGAGCGCCTCATATTTGTCACGTATGTGGTGCCAAATTGACTTCTGAATATTATTTGAAGATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAGGTGTGTAACAAGGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAATGATAAACCATGCATTTGTGAGATTTGTCACAAGTCTTTCGGTAATAGAGTTTATTTGAGAAGTCACATGAAGATTCATAGTCAGCCTGAAAATAGGAGGAAGTACAGATGCGAAATTTGTGGGTTCGAGACTTTCTACAGTTACTGTTATAAGGAACATCTGTGGACGCATACGGGAGAAAGTCAGGTGGCTTGTGAGGTTTGCGGTAAATTGATCAGGAGACAGTATATGAAGATTCATATTAGAATACACACTGGTGAGAAGCCGGAGATCTGTGAATTTTGCGGGAAAGCATTTAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTCAAATACCAGAATGATGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGACACGTTAGAAGAAAGTAACGACACGGAAATGAAATTGATTCTAGAAGAAGAAGAAGAAGAAACAAGAAACGTTAACATAGATTATAACAATAAATACGAGAGCAGGAAATGCTCAGTCATTTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAAAAGCTTCAATTCCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCATTGCGAGGAATGTGATAAAAGTTTCGCGGATGAAGAGAAATTGAAGAAACACATGATCAAAGTGCACCAAAAGGAGAAGCCTTTTCAATGTGTTCTCTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACCTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAAGTGTCTGGCTATGATCTTCGTTTACATAAAAAAAAACATAACGAGGAATATGTGACGCACTGTGAAATCTGCGGCAAAGGCTTCTACACGAACCAAACCCTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGCAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCACATGAAGTCTCACGGCGAACGAGAGAAACACAAGTGCAATATTTGTAATTTCGAAAGTTACTGGAAGGCGGCTCTAAAGGTGCACCTTAAAATACACACTGGAGAGAACCTGATCACCTGTGAGATATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATCCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTCGAAAATATCTGATTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAGGTATGTCAGAAAAGGTTCACGCAGCAAGGTTCACTGAATTCACATATGAAGTCGCATAACGAAAGAAAGTGA
- Protein Sequence
- MIDIFIKKKKKLLSTKKTDLALKIKPKSVKTIPAKRNQSRTAKSSNEEARSFVNKVIDNSHVVQEASYRCESCDEEFDTEATLLVHRTEQSILRTREALKKAQKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKVKDKTIKTKRKEPNVSSGPIECTVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSNDKPCICEICHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESNDTEMKLILEEEEEETRNVNIDYNNKYESRKCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEETGGHCEECDKSFADEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -