Bpic018115.1
Basic Information
- Insect
- Bombus picipes
- Gene Symbol
- nfxl1
- Assembly
- GCA_014737485.1
- Location
- JACXIP010000008.1:3049270-3052131[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1 1e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 19 0.14 1.4e+03 -0.4 0.8 4 10 161 167 160 167 0.95 3 19 5.3e-08 0.00055 20.1 15.1 1 18 175 191 175 192 0.98 4 19 9.8e-09 0.0001 22.4 16.0 1 19 229 246 229 246 0.95 5 19 0.19 2e+03 -0.8 0.1 5 10 270 275 269 276 0.95 6 19 6.3e-05 0.65 10.3 10.9 1 19 281 300 281 300 0.91 7 19 3.9e-05 0.41 10.9 9.2 1 18 336 353 336 354 0.97 8 19 0.0065 67 3.8 7.6 1 12 388 399 388 399 0.94 9 19 1.2 1.2e+04 -3.3 1.7 6 10 409 413 409 413 0.97 10 19 7.3e-08 0.00076 19.7 12.0 1 18 419 436 419 437 0.92 11 19 0.9 9.4e+03 -3.0 0.8 6 10 466 470 465 470 0.85 12 19 0.002 20 5.5 10.5 9 19 485 495 483 495 0.90 13 19 0.0024 25 5.2 6.2 1 12 505 515 505 515 0.95 14 19 0.81 8.4e+03 -2.9 5.8 14 18 547 551 547 552 0.89 15 19 0.00096 9.9 6.5 8.7 1 12 588 599 578 599 0.91 16 19 2 2.1e+04 -4.4 3.8 6 10 615 619 611 619 0.71 17 19 0.001 11 6.4 15.0 4 19 629 644 627 644 0.91 18 19 3.1e-05 0.33 11.2 12.1 1 16 651 665 651 671 0.88 19 19 1.3 1.3e+04 -3.5 0.3 5 10 700 705 700 705 0.90
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAGACAAGCTCAAGCAGAAAATAAAATAGCGATTAATAAACATTTAGAAGCAAATGCTTATCTAGAATCTTCCAGTGAGGATGAAGATGATAGAAATGAAGAGGATATACAAAATATAGTTGGAAAAGTAATATCTGCCTACCAAGGCAAAGAGGCAGATGCAGAAAAAATTTTATCGTATTTAATTAATATCTTTCAATCTGGCAATGCTGTTTGTTTAATATGTATTTCAACTGTAAAAAGAGCAGATCCAATTTGGAATTGTAACAAGTGTTTTGCTTTCCTACATCTGTCTTGCATTTTGCATTGGATACAGGATAGTTTGAATGTTAAACGTGAGAAAGATATCACATCAATATGGGCATGTCCAAAATGTCGTATGGAATATAATCAAGATGACATTCCTCGTAACTATAAATGCTTTTGTAAAAAAACCATAGATCCCCCATATAGTCCATGGAATATTCCACATTCCTGTGGAGAAACATGCGACAAACTGCTGCAACCAGAGTGTGGTCACAAATGTGTGTTGCTTTGCCATCCTGGACCATGTCCTCCTTGTGCAAAGACGATATCTATTAAATGCTACTGTGGCAAACAGATGCCTCAACAACGACGATGCAATGCCAAAGAATGGAGTTGTGGTACTGAATGTAACAAAGAGTATAAGTTATGTTCACACACTTGCAAAGAAGTGTGTCACTCAGGGGAATGTCCTCCTTGTCCAGAAATATTATTACTAGAATGCCACTGTAAGAGTAACAAAGAATTAAAGCAATGCTCTGAAGGTCTATGGACTTGTAATAAACTTTGTGGCAGACCTCTTTCATGTAATGTTCACATATGTCAAAGTAAATGTCATTTAATTGGCGACTGTGGACCCTGTCCATTGGAGAAGAATAGAACCTGTCCATGTGGGAAAAAACGTTATGCCATTTCTTGCAAACAAGAACAGCTACCCACATGTGGAGATACATGTGGAAAATTATTAAATTGCGGTTCACATTATTGTAATATGAGATGTCATACAGATCGTTGCGGGCAGTGTTTAGAGGTAGTCACAAAATCGTGTAGATGTGGCAGCTATCAGAAAGAAATTGCATGTGGCAAAGAATTCCATTGCAATAAAAAGTGTATGCAAATGCGGTTGTGCGGAAGACATTTGTGTAATAAGAAATGCTGCGACTGCTTAATTAAAAACACGTATAACGTGTGCGAAAAAGTATGTGATAATGCTTTAAACTGCCGCAAACACAAATGTGCTGCTCCTTGTCATAGCGGCCCTTGTTATCCGTGCGCACGAACTGACGTTATTCAATGTAGATGCGGATATAATAAGATGACAGTACCATGTGGTATGGTAAAAAAGATCAAGCCACCATCTTGCAATAAGCCGTGTAAAATACCTCCAATTTGCCATCATCCCAAACGAGAAACCCACAAATGCCATCAAGGTCACTGTCCACCTTGCAAAAAGATTTGTGGCATGGTATATAAACGATGTGGTCATTCCTGTGTAGCTGTTTGCCACACAAAAGTGTGGCTAAAGGTGAGAAAAAATGACATAAAGACGCAACCAGCAGGACCATGGGACATACAAAAGGAAACTTATCAGCTAAAAACATTACCATGTCCACCATGTGAAGTTTCTGTACAAGTTACATGTTTAGGAGGACATGAAACGCGTCCATGGCCTTGTCACATGGCTAGACCTACGTCTTGCGGGAGATTGTGCGGGAAAACGTTATTATGCACGAATCATACATGCGAATTGATCTGTCATAAAATACCATCATCTGAAGAAAATAAGAATGGTACCCCGTGTATGGAGTGTGAAAAACCATGTTTACTTCCACGACCACAAGGATGCACACATTTATGCTCAGAACCTTGTCATCCTGCACCATGTAACCCTTGCAAACAATTAGTTAAATATCCTTGTGGACATCGGTGTATAACTGATTGTCATCCTGGTCCATGCAAGAATGAAAAGGAATGCAACAAGAAGGTGAAGTTGTTTTGCGTGTGCAGACGTATTAAGAAAGATTTTATCTGTTCCGTGGTGCAGAAAGAGGAAATTTGTATAAAATGCGATGATATTTGTGCCAAACTAATAAACGAAAAACGTCAAGCCGAAGCTGCTTTATTAGAACAAAAGCGGCAAGCTGAAGAAATACGTAATCAACAAGAAATAGAGAAATTTGAACGAAAATTTAAACCCCGTCGCAAGGGAAAGGATAAATTCGATAAAAAACAATTACAAAATGAGACATGTAATAATTATAGAAAATATTGGATTTTAGGAATTTTAATATGTACAATAGGTATAGTAATATTTTACATGACCGCTCAACAATTGTGA
- Protein Sequence
- MQKFRQAQAENKIAINKHLEANAYLESSSEDEDDRNEEDIQNIVGKVISAYQGKEADAEKILSYLINIFQSGNAVCLICISTVKRADPIWNCNKCFAFLHLSCILHWIQDSLNVKREKDITSIWACPKCRMEYNQDDIPRNYKCFCKKTIDPPYSPWNIPHSCGETCDKLLQPECGHKCVLLCHPGPCPPCAKTISIKCYCGKQMPQQRRCNAKEWSCGTECNKEYKLCSHTCKEVCHSGECPPCPEILLLECHCKSNKELKQCSEGLWTCNKLCGRPLSCNVHICQSKCHLIGDCGPCPLEKNRTCPCGKKRYAISCKQEQLPTCGDTCGKLLNCGSHYCNMRCHTDRCGQCLEVVTKSCRCGSYQKEIACGKEFHCNKKCMQMRLCGRHLCNKKCCDCLIKNTYNVCEKVCDNALNCRKHKCAAPCHSGPCYPCARTDVIQCRCGYNKMTVPCGMVKKIKPPSCNKPCKIPPICHHPKRETHKCHQGHCPPCKKICGMVYKRCGHSCVAVCHTKVWLKVRKNDIKTQPAGPWDIQKETYQLKTLPCPPCEVSVQVTCLGGHETRPWPCHMARPTSCGRLCGKTLLCTNHTCELICHKIPSSEENKNGTPCMECEKPCLLPRPQGCTHLCSEPCHPAPCNPCKQLVKYPCGHRCITDCHPGPCKNEKECNKKVKLFCVCRRIKKDFICSVVQKEEICIKCDDICAKLINEKRQAEAALLEQKRQAEEIRNQQEIEKFERKFKPRRKGKDKFDKKQLQNETCNNYRKYWILGILICTIGIVIFYMTAQQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00217442;
- 90% Identity
- iTF_00217442;
- 80% Identity
- -