Bopu003439.1
Basic Information
- Insect
- Bombus opulentus
- Gene Symbol
- -
- Assembly
- GCA_034509555.1
- Location
- CM067411.1:3174473-3178476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 0.97 10.2 0.0 1 20 86 105 86 107 0.95 2 19 0.057 4.5 8.1 2.3 1 21 124 144 124 145 0.96 3 19 0.00014 0.011 16.3 3.0 2 23 180 201 179 201 0.94 4 19 0.0002 0.016 15.8 2.2 1 23 205 227 205 227 0.97 5 19 0.00019 0.015 15.9 0.6 3 23 235 255 234 255 0.97 6 19 3.3e-05 0.0026 18.3 3.6 2 23 262 283 261 283 0.96 7 19 0.12 9.6 7.0 2.5 1 19 292 314 292 316 0.73 8 19 0.18 14 6.5 0.2 3 23 322 341 321 341 0.95 9 19 0.51 40 5.1 2.3 3 13 349 359 348 362 0.89 10 19 0.047 3.7 8.3 2.4 1 23 450 472 450 472 0.97 11 19 2.5e-05 0.0019 18.7 1.0 3 23 483 504 482 504 0.96 12 19 0.00016 0.012 16.1 4.9 1 23 510 532 510 532 0.98 13 19 0.039 3.1 8.6 0.4 1 23 536 558 536 558 0.97 14 19 4.9e-06 0.00038 20.9 1.5 3 23 566 586 564 586 0.97 15 19 1.4e-05 0.0011 19.4 0.2 1 23 592 614 592 614 0.98 16 19 0.087 6.8 7.5 0.9 1 23 620 642 620 642 0.97 17 19 4.2e-07 3.3e-05 24.2 0.1 2 23 649 670 648 670 0.97 18 19 7.5e-07 5.9e-05 23.4 0.6 1 23 676 698 676 698 0.98 19 19 1.3e-07 1e-05 25.8 1.9 1 23 704 726 704 726 0.99
Sequence Information
- Coding Sequence
- ATGCTTTTAACAACGCGAATATTACAGAAATCTGACGTCGAGCTTTTTTCCAAGTTACGTTCTTTCCGCATGCTTTTCATGGCTGTGTGCATTTTGTGCAACAAAACAGATTTAGCTTCGAAGATAAAACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCGTCCAACGAGGAAGCTCGATCGTTTGTGAACAAAGTGATCGATAACTCTCACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTCGACACGGAGGCTGCTCTGTTGGTACACAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTGAAAAGAAATACACGTGTGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGCGAAGGacaaaacgataaaaacgaaacggAAGGAACCGAATGTTTCTACTGGTCCGATCGAGTGCAACGTGTGTCATAAAGtttttaagaagaagaaatatctaaaTGTTCATAAAACGTTGCATGGAGCGCCTCATATTTGTCACGTATGCGGTGCCAAATTGACTtctgaatattatttgaagATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAAGTGTGTAACAAGGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAATGATAAACCGTGCATTTGTGAGGTTTGTCACAAGTCTTTCGGTAATAGAGTTTATTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAAAATAGGAGGAAGTACAGATGCGAAATTTGTGGATTCGAGACTTTCTACAGTTACTGTTATAAGGAACATCTGTGGACGCATACGGGAGAAAGTCAGGTGGCCTGTGAGGTTTGCGGTAAATTGATCAGGAGACAGTATATGAAGATTCATATTAGAATACACACTGGTGAGAAGCCGGAGATCTGTGAATTTTGCGGCAAAGCATTTAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTAAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGACACGTTAGAAGAAAGTAACGACGCGGAGATGAAACTGATTctagaagaagaggaggaggaagaagaagaaacagggAACGTTAACGTagattataacaataaatacgAGAGCAGAAAATGCTCGGTCATTTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAGAAGCTTCAATTTCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCATTGCGAGGAATGTGATAAAAGTTTCGCGGATGGAGAGAAATTGAAGAAGCACATGATCAAAGTGCATCAAAAGGAGAAGCCTTTTCAATGTGTTCTTTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACCTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCgtttacataaaaagaaacataacgAGGAATATGTGACGCACTGTGAAATCTGCGGCAAAGGCTTCTACACGAACCAAACCTTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGTAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCACATGAAGTCTCACGgcgaacgagagaaacacaagtgcaatatttgtaatttcgaaaGTTACTGGAAGGCGGCTCTAAAGGTGCACCTTAAGATACACACTGGAGAGAACCTGATCACCTGTGAGATATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATTCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTCGAAAATATCTGATTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAAGTATGTCAGAAAAGGTTCACGCAGCAGGGTTCACTGAATTCGCATATGAAGTCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MLLTTRILQKSDVELFSKLRSFRMLFMAVCILCNKTDLASKIKPKSVKTIPAKRNQSRTAKSSNEEARSFVNKVIDNSHVVQEASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKEPNVSTGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSNDKPCICEVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESNDAEMKLILEEEEEEEEETGNVNVDYNNKYESRKCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEETGGHCEECDKSFADGEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -