Bopu008266.3
Basic Information
- Insect
- Bombus opulentus
- Gene Symbol
- -
- Assembly
- GCA_034509555.1
- Location
- CM067416.1:1417072-1420510[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8e-13 1.3e-09 37.7 0.0 1 39 351 390 351 394 0.90 2 4 3.2e-12 5.2e-09 35.8 0.1 2 39 406 443 405 446 0.94 3 4 9e-19 1.5e-15 56.8 0.0 2 45 461 505 460 505 0.97 4 4 1e-18 1.7e-15 56.6 0.1 1 42 512 554 512 555 0.97
Sequence Information
- Coding Sequence
- ATGTCGTTCTTGCGAGGAGCCCGTCGCGCTGCTCGATACGGGTCGACGCACCGTGCCGGTGAATCGTCGTCGTACGCCGAAACTGGATCGCGAATACTGATTTTAGACCGAGCCATCGCAAGCGGCAATCGCAAGATGAAACCGTACCCACTGAAACGAGCCTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTATAAGAGGCCCAGAACCACGTTCGAACCTCGCGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGTAACAGTAACAATAGTACCACTACTGGCACCaccaataataacaataacaacaacaacaataataacaacgCTAGCAGCAACGGCAACGGTAACAATACGagcaacaacaataacaacggtgACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGATCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACGATTACACATTTAAGGGACCCGGATCATCATTCCACAGAGATCCAAAATTGTGACAgtgtaaaaatcaaatttgaaacattgCACACGATGGATTCGTCGGAcacgatcgatatcgatagcCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGTTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGACACTCCAAAAAAAGACGGACCTACAAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGCTAGAAGCGTTACGGACCGGAACGATATCTGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCCGCGCCATTCAACGCAAGTCCCACAACCTGGTCGCCCGCCGATCTGGATCGCGCTCTCGAAGCGATACGTTCTGGTCAAACGTCGGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGGACATTATATGGTCGATGCAAGAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTCGAAGCTGTCAGGTTAGGCCATATGAGCATCAATCAAGCGGCTATTCACTACAACCTGCCCTACTCTTCCTTATACGGCCGCTTCAAAAGAGGAAAATACGAAGAGCCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MSFLRGARRAARYGSTHRAGESSSYAETGSRILILDRAIASGNRKMKPYPLKRASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRNSNNSTTTGTTNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- -