Bmus008589.1
Basic Information
- Insect
- Bombus muscorum
- Gene Symbol
- nfxl1
- Assembly
- GCA_963971185.1
- Location
- OZ020131.1:7206884-7209994[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.1 1.4e+04 -3.2 1.1 15 19 126 130 125 130 0.81 2 21 0.14 2e+03 -0.5 0.8 4 10 161 167 160 167 0.95 3 21 5.6e-08 0.00075 20.0 15.1 1 18 175 191 175 192 0.98 4 21 1e-08 0.00014 22.4 16.0 1 19 229 246 229 246 0.95 5 21 0.33 4.5e+03 -1.6 0.3 5 10 270 275 270 277 0.93 6 21 6.6e-05 0.9 10.2 10.9 1 19 281 300 281 300 0.91 7 21 1.7 2.3e+04 -3.9 0.7 6 10 326 330 325 332 0.58 8 21 4.1e-05 0.56 10.9 9.2 1 18 336 353 336 354 0.97 9 21 0.0024 33 5.2 8.7 1 12 388 399 388 399 0.94 10 21 1.2 1.6e+04 -3.4 1.7 6 10 409 413 409 413 0.97 11 21 7.7e-08 0.001 19.6 12.0 1 18 419 436 419 437 0.92 12 21 0.95 1.3e+04 -3.1 0.8 6 10 466 470 465 470 0.85 13 21 0.00019 2.6 8.7 8.2 10 19 486 495 483 495 0.90 14 21 0.0025 34 5.2 6.2 1 12 505 515 505 515 0.95 15 21 0.85 1.2e+04 -2.9 5.8 14 18 547 551 547 552 0.89 16 21 0.25 3.3e+03 -1.2 0.3 6 10 578 582 577 584 0.89 17 21 0.00019 2.6 8.7 6.1 1 12 588 599 588 599 0.95 18 21 1.9 2.6e+04 -4.1 3.5 6 10 615 619 611 619 0.73 19 21 0.0011 15 6.3 15.0 4 19 629 644 627 644 0.91 20 21 0.12 1.6e+03 -0.2 0.2 3 9 659 665 653 665 0.67 21 21 9.2e-06 0.13 12.9 11.7 1 16 689 703 689 709 0.88
Sequence Information
- Coding Sequence
- atGCAGAAATTTAGGCAAGCTCaagcagaaaataaaatagcaatTAACAAACATTTAGAAGGAAATGCTTATCTAGAATCTTCCAGTGAGAGTGAAGATGATATAAATGAAGaggatatacaaaatatagttGGAAAAGTAATATCTGCCTATCAAGGCAAAGAGGCAGACACagaaaaaattttatcatatttaattaatactttcCAATCTGGCAATGCTGTTTGtttaatatgtatttcaaatGTAAAAAGAACAGATTCAATTTGGAATTGTAACAAGTGTTTTGCTTTCCTACATATGCCTTGCATTTTACATTGGATAAACGATAGTTTGAAGGTTAAACGTGAGAAAAGTATCATATCAATATGGGCATgTCCAAAATGTCGTATGGAATATAATCAAGATGACATTCCTCGTAAATATAAATgcttttgtaaaaaaaccatAGATCCCCCAAATAATCCATGGAATATTCCACATTCCTGTGGAGAAACATGTGAAAAACTGCTGCAACCAGAATGTGGTCACAAATGTGTTTTGCTTTGCCATCCTGGACCATGTCCTCCTTGTGCAAAGACGGTATCTATTAAATGCTACTGTGGCAAACAGATGCCTCAACAACGACGATGTAATGCCAAAGAATGGAGTTGTGGTACTGAATGTAACAAAGAGTATAAGTTATGTTCACACACTTGCAAAGAAGTGTGTCACTCAGGGGAATGTCCTCCTTGTCCAGAAATATTATCACTAAAATGCCACTGTAAGAGTAACAAAGAATTAAAGCAATGCTCTGAAGGTCTATGgacttgtaataaaatttgtggCAGACCTCTTTCTTGTAATGTTCACATATGTCAAAGTAAATGTCATTTAATTGGCGACTGTGGACCCTGTCCATTGGAGAAGAATAGAACATGTCCATGTGGGAAAAAACGTTATGCTATTTCTTGCAAACAAGAACAGCTACCCACATGTGGAGATACatgtgaaaaattattagattgcGGTTCGCATTATTGTAATATGAGATGTCATACAGATCGTTGCGGGCAGTGTTTAGAGGTAGTCAACAAATCGTGTAGATGTGGCAGCTACCAGAAAGAAATTGCATGTGGTAAAGAATTTCATTGCAATAAAAAATGCATGCAAATGCGGTTATGCGGAAAACATTCGTGTAATAAGAAGTGCTGCGACTGCTTGATTAAAAACACATATAACGTGTGCGAAAAAGTATGCGATAATGTTTTAAACTGCCGCAAACACAAATGTGCTGCTCCTTGTCATAGCGGCCCTTGTTATCCGTGCGCACGAACTGACGTTATTCAATGTAGATGCGGACATAATAAGATAACAGTACCATGTGGTATTGTAAAAAAGATCAAGCCACTATCTTGCAATAAGCCATGTAAAATACCTCCAATTTGTCATCATCTCAAACGAGAAACTCACAGATGCCATCAAGGTCAATGTCCACCTTGCAAAAAGATTTGCGACATTGTATATAAACGATGTGGTCATTCTTGTGTAGCTGTTTGCCACACAAAAGTGTGGCAAAAGGTGAGCAAAAATGACATAAAGACACAACCAGCAGGACCATGGGACATACAAAAGGAAATTTATCAGCTAAAAACATTACCATGTCCACCATGTGAAGTTTCTGTACAAGTTACATGTTTAGGAGGACATGAAACGCGTCCATGGCCTTGTCACATGGCTAGACCTACGTCTTGCGAAAGATTGTGCGGAAAAACGTTATTATGCACGAATCATACATGCGAATTGATTTGTCATAAAATACCATCTTctgaagaaaataagaatagtACCCCGTGTATGGAGTGTGAAAGACCATGTTTACTGCCACGACCACAAGGATGCACACATTTATGCTCAGAACCTTGTCATCCTGCACCATGTAGCCCTTGCAAACAATTAGTTAAAATTTCATGCCATTGTGGTATAAGCACTTTATATCATAGATGTTCTGAATTAACATCGGCTAAAGCTAAAAGACGTAATGAATTGTTCAAATGCGGGAATCAATGCCccaaaaatTATCCTTGTGGACATCGATGTATAAATGATTGTCATCCTGGTCCATGCAAGAATGAAAAGGAATGCAACAAGAAGGTGAAGCTGTTTTGCGTGTGCAGGCGTATTAAGAAAGATTTTATCTGTTCCGTGGTGCAGAAAgaggaaatttgtataaaatgtgATGATATTTGTGCCAAACTAATAAACGAAAAACGTCAAGCCGAAGCTGCTTTATTAGAGCAAAAGCGGCAAGCTGAAGAAATACGTAATCAAcaagaaatagagaaatttgaacgaaaattTAAACCCCGTCGTAAGGGAAGggataaattcaataaaaaacaattacaAAATGAGACATGTagtaattatagaaaatattggaTTTTAGGTATTTTAATATCCACAATAGGTatagtaatattttacatgACTGCTCAACGATTCTGA
- Protein Sequence
- MQKFRQAQAENKIAINKHLEGNAYLESSSESEDDINEEDIQNIVGKVISAYQGKEADTEKILSYLINTFQSGNAVCLICISNVKRTDSIWNCNKCFAFLHMPCILHWINDSLKVKREKSIISIWACPKCRMEYNQDDIPRKYKCFCKKTIDPPNNPWNIPHSCGETCEKLLQPECGHKCVLLCHPGPCPPCAKTVSIKCYCGKQMPQQRRCNAKEWSCGTECNKEYKLCSHTCKEVCHSGECPPCPEILSLKCHCKSNKELKQCSEGLWTCNKICGRPLSCNVHICQSKCHLIGDCGPCPLEKNRTCPCGKKRYAISCKQEQLPTCGDTCEKLLDCGSHYCNMRCHTDRCGQCLEVVNKSCRCGSYQKEIACGKEFHCNKKCMQMRLCGKHSCNKKCCDCLIKNTYNVCEKVCDNVLNCRKHKCAAPCHSGPCYPCARTDVIQCRCGHNKITVPCGIVKKIKPLSCNKPCKIPPICHHLKRETHRCHQGQCPPCKKICDIVYKRCGHSCVAVCHTKVWQKVSKNDIKTQPAGPWDIQKEIYQLKTLPCPPCEVSVQVTCLGGHETRPWPCHMARPTSCERLCGKTLLCTNHTCELICHKIPSSEENKNSTPCMECERPCLLPRPQGCTHLCSEPCHPAPCSPCKQLVKISCHCGISTLYHRCSELTSAKAKRRNELFKCGNQCPKNYPCGHRCINDCHPGPCKNEKECNKKVKLFCVCRRIKKDFICSVVQKEEICIKCDDICAKLINEKRQAEAALLEQKRQAEEIRNQQEIEKFERKFKPRRKGRDKFNKKQLQNETCSNYRKYWILGILISTIGIVIFYMTAQRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00217442;
- 90% Identity
- iTF_00217442;
- 80% Identity
- -