Basic Information

Insect: Bombus muscorum
Gene Symbol: -
Assembly: GCA_963971185.1
Location: OZ020138.1:3218091-3220501[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0001 0.012 16.6 2.4 3 23 246 267 245 267 0.96

2 10 0.0021 0.23 12.5 3.7 1 23 271 293 271 293 0.99

3 10 2.3e-05 0.0026 18.7 1.6 1 23 299 322 299 322 0.97

4 10 0.004 0.45 11.7 5.2 1 23 329 352 329 352 0.97

5 10 0.0013 0.14 13.2 3.6 1 23 386 409 386 409 0.95

6 10 0.26 29 6.0 0.5 5 21 422 438 421 439 0.90

7 10 4.6e-06 0.00051 20.9 0.8 1 23 446 468 446 468 0.95

8 10 3.5e-06 0.00039 21.3 6.7 3 23 474 494 472 494 0.97

9 10 2e-06 0.00022 22.1 1.4 1 23 500 522 500 522 0.99

10 10 2.3e-06 0.00026 21.8 1.0 1 23 528 550 528 550 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0001	0.012	16.6	2.4	3	23	246	267	245	267	0.96
2	10	0.0021	0.23	12.5	3.7	1	23	271	293	271	293	0.99
3	10	2.3e-05	0.0026	18.7	1.6	1	23	299	322	299	322	0.97
4	10	0.004	0.45	11.7	5.2	1	23	329	352	329	352	0.97
5	10	0.0013	0.14	13.2	3.6	1	23	386	409	386	409	0.95
6	10	0.26	29	6.0	0.5	5	21	422	438	421	439	0.90
7	10	4.6e-06	0.00051	20.9	0.8	1	23	446	468	446	468	0.95
8	10	3.5e-06	0.00039	21.3	6.7	3	23	474	494	472	494	0.97
9	10	2e-06	0.00022	22.1	1.4	1	23	500	522	500	522	0.99
10	10	2.3e-06	0.00026	21.8	1.0	1	23	528	550	528	550	0.99

Sequence Information

Coding Sequence: ATGATAGTTGGAAAACCGACTGCAAGAACTGCTTTGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGAGTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATACAGAATTCCATGTCCTTGAAAGTTGAAGTAGATCACGACGAGAACAGTCAGAGTATAGTCAAAGACAACGAAGACGAAGTTAACGATAGTAGTTGCACTTTaggaaaagaaatagttgATGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTAAGGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGATGGATCGATGTCTTACGAAATTAAAAAGGTCATTGTACCTATCAAGTCGGAATTGAGTTTATCGTCAAAAAAGAAGACAGGGAAAAGAactttattaacaaataaagcTAGAAGTAAGCAGGTGaattgtaagaaaaaagagaagaaagaaaacgaagagaaacagGGTACGTTATTGGGAAAAAGGACGGGGAgtcgagaaaggaaaaaggaggaaCAGAAGGAACAGAAGGTAGAAAAGGAAACAGAGGAAGTACCAAAGTTAGAACTGGACAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACAATTTAAAGAACATTTGCCCCTTTTGTCAGAAATGTTTCAGAGACGAGGACCAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTACTTTCGTTTTATCGGTGTTCCATCTGTCAGAAGCAGTACAAAACCGCGACAGGATTAAAGAATCATCAGACCCGTGAACACAGTGACATAGACCCCAAATTTAAGTGTTATTACTGTAAGAAgcaattcaaattaaaattagaccTAAACCTTCACATCCACAGATCGCACATGAATACAACTTACATTTGCAGATTCTGTGGCATGGAAGTGAAGAATATCGTGCATCACGAACTAAAGCACGAAAAGAACAAGAAAATCAGTTCTTTGCATCATTGCAGTATCTGTTCTAGGAAATTCAAAGCGTGGAACAGCTTGGAGAATCATTTATTAATGAAGCACAAAGCTCCTAAGGAAGGATTAGACATGTTAAGGACACTGtgtgaaaagaaatttcaatctaGAAGTGATTTTTATCATCATGTGCTTAGCCAATCGGATACCAAGCAACATAAGTGTGTCATTTGCGACAAAACATTTGCTTCCGAGTATAATCTTCGCAGCCACGTCGCTCTACACTCGCAAACTTGCCTGTGTTCCCACTGTGGCAAGACCTTTACCACGAACTATTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAgtgtaaaatatgtttaaagaCATTTGCCAGATCAAACTCGCTTAAAATACATACGTTAACTCACACTGGTGAAAAACCATATGTATGTGATTTATGTGGTCAAAGTTTCACTCAGAGAGGAAGCATGATGACGCATCGTCGTAAGCATCCCGGAAGTCATCCGCCGCCTGCTCCTTCGAAACTAAATAAACTCGAAAATAACgaacattaa
Protein Sequence: MIVGKPTARTALRSTIAETSLDQGRNDRVQFQVTVPASSPTIQNSMSLKVEVDHDENSQSIVKDNEDEVNDSSCTLGKEIVDDSIVDSVKTVLVPVRDPVTKEIKNMLVPVEVRDESGLNIIKSVLIPFPAEDGSMSYEIKKVIVPIKSELSLSSKKKTGKRTLLTNKARSKQVNCKKKEKKENEEKQGTLLGKRTGSRERKKEEQKEQKVEKETEEVPKLELDSISTDVSKEEVDQILDNLKNICPFCQKCFRDEDQMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVLSFYRCSICQKQYKTATGLKNHQTREHSDIDPKFKCYYCKKQFKLKLDLNLHIHRSHMNTTYICRFCGMEVKNIVHHELKHEKNKKISSLHHCSICSRKFKAWNSLENHLLMKHKAPKEGLDMLRTLCEKKFQSRSDFYHHVLSQSDTKQHKCVICDKTFASEYNLRSHVALHSQTCLCSHCGKTFTTNYSLKLHLRKHTGERPYQCKICLKTFARSNSLKIHTLTHTGEKPYVCDLCGQSFTQRGSMMTHRRKHPGSHPPPAPSKLNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218604;
90% Identity: iTF_00218604; iTF_00224734; iTF_00219297; iTF_00215205; iTF_00229538; iTF_00215895; iTF_00231502; iTF_00228157;
80% Identity: -