Basic Information

Insect: Bombus campestris
Gene Symbol: -
Assembly: GCA_905333015.1
Location: HG995128.1:3206939-3208776[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00022 0.018 15.4 0.9 3 23 248 269 247 269 0.96

2 10 0.0018 0.14 12.5 3.7 1 23 273 295 273 295 0.99

3 10 8.2e-05 0.0065 16.8 1.0 1 23 301 324 301 324 0.97

4 10 0.0022 0.18 12.3 5.1 1 23 331 354 331 354 0.97

5 10 0.0013 0.1 13.0 4.3 1 23 388 411 388 411 0.95

6 10 0.26 21 5.7 0.5 5 20 424 439 423 441 0.91

7 10 7e-05 0.0055 17.0 0.8 1 23 448 470 448 470 0.93

8 10 9e-07 7.1e-05 22.9 4.4 1 23 474 496 474 496 0.96

9 10 2.6e-06 0.00021 21.5 1.8 1 23 502 524 502 524 0.99

10 10 1.3e-06 0.0001 22.5 1.1 1 23 530 552 530 552 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00022	0.018	15.4	0.9	3	23	248	269	247	269	0.96
2	10	0.0018	0.14	12.5	3.7	1	23	273	295	273	295	0.99
3	10	8.2e-05	0.0065	16.8	1.0	1	23	301	324	301	324	0.97
4	10	0.0022	0.18	12.3	5.1	1	23	331	354	331	354	0.97
5	10	0.0013	0.1	13.0	4.3	1	23	388	411	388	411	0.95
6	10	0.26	21	5.7	0.5	5	20	424	439	423	441	0.91
7	10	7e-05	0.0055	17.0	0.8	1	23	448	470	448	470	0.93
8	10	9e-07	7.1e-05	22.9	4.4	1	23	474	496	474	496	0.96
9	10	2.6e-06	0.00021	21.5	1.8	1	23	502	524	502	524	0.99
10	10	1.3e-06	0.0001	22.5	1.1	1	23	530	552	530	552	0.99

Sequence Information

Coding Sequence: ATGCGAATAAATGCGACATCGAACTCGACGAAGACCAATCTGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGACTGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCCACGATGCAGAATTCCATGTCCTTGAAAGTTGAAATAGATCACGACGAGAACAGTCAGAGGACAGTCAGAAACAATGAAGACGAAGTTAACGATAGTAGTTCCACTTTAGGAAGAGAAATAGTTGATGATTCGATCGTGGACTCGGTGAAAACTGTTTTGGTGCCTGTTAGAGATCCAGTGACGAAGGAAATTAAGAATATGTTGGTACCTGTTGAAGTGAAGGACGAGTCTGGATTAAACATAATCAAAAGTGTATTAATTCCTTTTCCAGCAGAGGACGGATCTATGTCTTACGAAATTAGAAAGGTCATTGTGCCTATCAAGTCGGAATTGAGTTTATcgtcaaaaaagaaaacaaggaaAAAAGCTTTATTAACAGATAAAGCTAGAAGTAAGCAGGTGAATtgtaagaaaaaagaggagaaagaaaacgaagagaaacagGAGACGTTATTGGGAAAAAGGACAAAGAGccgagaaaggaaaaaggaggaacaaaaggaaaagaaggtaGAAAAGGAAACAGAGAAAGTATCAAAGTTAGAACTGGACAGTATATCGACAGATGTATCCAAGGAGGAAGTGGATCAAATATTGGACACTTTAAAGAACATTTGCCCATTCTGTCAGAAGCGTTTCAGAGACGAGAACGAAATGCAAAAGCACGTCCTCAAGACACATAAGAAACCATATAGTTGCGACAAGTGTCATAAAGGCTACTTCTCCGACTTTACTCTAGAAGAACACCAGAAAACACACGATGTACTTTCGTTTTATCAGTGTTCCATCTGTCAGATGCAGTACAAAACCGCGACAGGATTAAAGAATCATCAGACCCGTGAACACAGCGACATAGACCCCAAATTTACGTGTTATTACTGTAAGAAGcgattcaaattaaaattagaccTAAACCTTCACATCCACAGATCGCACATGAACACAACTTACATTTGCAGATTCTGTGGCATAGCAGTGAAGAATATCGTGCATCACGAACTAAAACACGAAAAGAACAAGAAAATCAGTTCTCTGCATCATTGCAATATCTGTTCTAGGAAATTCAAAGCGTGGAACAGTTTGGAGAATCATTTATTAAAGAAGCACAAAGCTCCTAAGGAAGGATTAGGCATGTTAAGGACACTGtgtgaaaagaaatttcaatctaGAAGTGATTTTTATCATCATGTGCTTAATCAATCGGAGGCCAAGCAGCACAAGTGTATCATTTGCGACAAAACATTTGCTTCTGAGTATAATCTTCGTAACCACGTCGCTCTACACTCGCATACTTACCTGTGCTCCCACTGTGGCAAGAATTTTACCACGAACTACTCGTTGAAGCTGCATCTTCGAAAACACACTGGCGAACGGCCGTATCAgtgtaaaatatgtttaaagaCATTTGCCAGATCAACCTCGCTTAAATTACATACGTTAACTCACACTGGTGAAAGACCATATGTCTGTGATTTATGTGGTCAAAGTTTCACTCAGAAAGGAAGCATGATGACACATCGTCGTAAGCATCCCGGAAGTCATCCGCCGCCTCCACCTTTAAAACTAAATAAACTCGAAAATAACGaacattaa
Protein Sequence: MRINATSNSTKTNLRSTIAETSLDQGRNDRLQFQVTVPASSPTMQNSMSLKVEIDHDENSQRTVRNNEDEVNDSSSTLGREIVDDSIVDSVKTVLVPVRDPVTKEIKNMLVPVEVKDESGLNIIKSVLIPFPAEDGSMSYEIRKVIVPIKSELSLSSKKKTRKKALLTDKARSKQVNCKKKEEKENEEKQETLLGKRTKSRERKKEEQKEKKVEKETEKVSKLELDSISTDVSKEEVDQILDTLKNICPFCQKRFRDENEMQKHVLKTHKKPYSCDKCHKGYFSDFTLEEHQKTHDVLSFYQCSICQMQYKTATGLKNHQTREHSDIDPKFTCYYCKKRFKLKLDLNLHIHRSHMNTTYICRFCGIAVKNIVHHELKHEKNKKISSLHHCNICSRKFKAWNSLENHLLKKHKAPKEGLGMLRTLCEKKFQSRSDFYHHVLNQSEAKQHKCIICDKTFASEYNLRNHVALHSHTYLCSHCGKNFTTNYSLKLHLRKHTGERPYQCKICLKTFARSTSLKLHTLTHTGERPYVCDLCGQSFTQKGSMMTHRRKHPGSHPPPPPLKLNKLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218604;
90% Identity: iTF_00223375;
80% Identity: -