Bmus018135.1
Basic Information
- Insect
- Bombus muscorum
- Gene Symbol
- ZFY_1
- Assembly
- GCA_963971185.1
- Location
- OZ020138.1:3191331-3194790[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.089 9.8 7.4 1.3 1 23 23 46 23 46 0.86 2 16 2.1e-06 0.00023 22.0 0.6 1 23 52 75 52 75 0.97 3 16 0.00062 0.068 14.2 5.2 3 23 82 103 80 103 0.95 4 16 4.1e-05 0.0045 17.9 0.7 1 23 108 131 108 131 0.97 5 16 2.7e-06 0.0003 21.6 2.2 2 23 138 159 137 159 0.97 6 16 9.8e-05 0.011 16.7 1.3 1 23 165 187 165 187 0.97 7 16 4.4e-05 0.0049 17.8 0.5 1 23 193 215 193 215 0.97 8 16 0.0015 0.16 13.0 0.4 2 23 466 488 465 488 0.91 9 16 0.36 40 5.5 0.3 1 23 500 523 500 523 0.95 10 16 0.041 4.5 8.5 3.5 1 23 536 559 536 559 0.93 11 16 4.5e-05 0.005 17.8 5.9 1 23 565 587 565 588 0.95 12 16 0.01 1.1 10.4 0.3 3 23 595 616 593 616 0.94 13 16 0.00072 0.08 14.0 1.5 1 23 621 644 621 644 0.98 14 16 3.2e-07 3.6e-05 24.5 0.4 2 23 651 672 650 672 0.96 15 16 2.7e-06 0.0003 21.6 1.3 1 23 678 700 678 700 0.97 16 16 3.5e-05 0.0039 18.1 1.0 1 23 706 728 706 728 0.98
Sequence Information
- Coding Sequence
- ATGATTGCTCACTTGGTACAGAATCACGAAGATTCAGGCGAGAATAGATCAACCAATAACAGGAAATTCGCTTGCATTATTTGTGGTCTTATCTGTTCTCGAAAGGAAACTTTGAGATCTCACTTTGTACGAAAACACACACAGCTTTATGAGTTCTCCTGTGAGCAATGCGGCAAGGAATTCAAGATCAAAGGTGATTTAACGACTCACATGAGACTGAATCACAAAGAACCTCCTGTGATATGCGACGTTTGTGGCAAAACTTGTAAAAATAGTCACAGTCTGTATACTCATCAGAAACACGCTCACTATAAAGCGAAATACGAGTGCCCGGTGTGTCACAAGAGATTGGTGACCAAAGAGAACCTAGATCAGCACGTGTTGACTCAGcacgaaaagaaagagaagtcTGTCTGCGAAGAATGTGGGAAAACATTCTTTGAAAATCACGATTTCAGGAAACACATGAGGATACACACTGGGGATAAACCTTATAGCTGTTCTGTTTGTGCCAGAGCGTTTACTACTCATAGCAGTTTGAGTCAACATTTACTCTTGCACACAGGAGAAAGGATTTATGTCTGCGACGTGTGTGGAAAATCGTTTGCTCAGAAGGCTGGTCTTATATGTCACAGGAAGATCCATTCTGGATCGTACGAGTTCGACCACTTCAACTCGCGCGGTATCTTTATCTACGACAAGGAATCCGTCGTGATGAAAAAATGGCAGATCCTGGAATTCGACGGGAAGCCGTACTACGCTTTTGTACCTGAAGACGACACGCCACTAGCTGACGAGGATATTCCCGAACAGATAGACGAGATAGATCACGAGGATGAAAAACAGAATCTCGTCAAAGTCGAATGTCTTTACAACGAAGATGAACTACAGTACGATTCGACGGACGAGAAATTATACGAGGATGAAGATCTTTTAAACAGAAGTACAGAGCacaaggaagaagaagaagaagatataaaACCGATAATTCTAAACGGCACGATTGACGAAGAGAACGACAAAACGATTGGAGATATTTATCAGGTCAAAGTTCAGGGTAGTATGGTCACTATAGAGAAGCTGACATCCGGTGACATCGAAGATACGAAGGAAGTAGTGGAGTATCAAGAAGTGGAACACGAGGAACAAGAGGAGCAAGAGGAGCAAGAAGAACAAGAGGAGCAAGAGGAGCAAGAGGTGCAAGAGGAGCAAGATGTGCAAGATGTGTATAACGATCAAGAGCAGTTGGAACAGATAGATCAAGTAGATCCGGATGATCCAGATCAGATAGAACAGGTGGAATACTTGGAGGAAGAGATGTTGGAGTTGCCGAATAATCATGTGACACCAACGAAGACGCGTAGGAAAATTTCCAGAAGTCCGAGCAATGCACTGAAATGCAAACTTTGCTCGGAGATGTTCAGCTCGGCCATTTCCTTCAGGAAACATGTGGCATGGACGCACAAGAAGAAGGTGTGCATACAGGAAGATGGCGCGTATATCTGCGCGGTTTGCGATTACAGGACGCTTAAGAAGAGTCTCTTCGCGGCTCACTTGGAAAGGAAGCACGAAACTTGGTCCAGGAAACGACCCAATAACATGTTATTCCCTTGCGCTGCCTGTGGCTTCGTGTGCAGATCGAAGCACTCGTTGCAATCGCACTTTATTAGAAAACACACCGATCGGTACGAGCATCAGTGCAAATTTTGTCCAAAGAAGTTCAAAGTGAAAGGCGACCTGACCAACCACATACGGTTCCATCATAAAGAAAAACCGATTAACTGTCCCGTATGTGGAAAACTATGTCAAAATACTGGCTCTCTTTACGTACACCAGAAATGGGCACATTTTAAACCTAAGTATGAGTGTCATATATGCAAACGACGCATGGTCACACAGGAAAATCTTGACCAACATTTGCTAACGCAGCACGAGAAAAGGGAGAAGATAGTATGCGCCGAATGCGGAAAAACGTTCACTAAAAAAGATTCTTTTAAAAGGCACATGGCAGTACACACAGGGTGCAAGCCACATTCCtgtttaatttgcaataaacCATTCGCGAGGAGGTCTCAGCTACGCCAACATTTGCTCATTCACACTGGGAAGAGGCCTTTTGTCTGCGACATTTGTGGGAAAGCGTTCACGCAGAAACCCGGTCTGATCTGTCATAGGAAAACTCATCCTGGACCTCATCCTCCTTTACCTGTGATGCCAATTGCGGATATCGTGAAAGAGTTCACCGAAGGTTACGTACAGGAGATAAGCGCTCGTGAAAACGAGGAAAGGATCGAAGAGGAAGCGTAG
- Protein Sequence
- MIAHLVQNHEDSGENRSTNNRKFACIICGLICSRKETLRSHFVRKHTQLYEFSCEQCGKEFKIKGDLTTHMRLNHKEPPVICDVCGKTCKNSHSLYTHQKHAHYKAKYECPVCHKRLVTKENLDQHVLTQHEKKEKSVCEECGKTFFENHDFRKHMRIHTGDKPYSCSVCARAFTTHSSLSQHLLLHTGERIYVCDVCGKSFAQKAGLICHRKIHSGSYEFDHFNSRGIFIYDKESVVMKKWQILEFDGKPYYAFVPEDDTPLADEDIPEQIDEIDHEDEKQNLVKVECLYNEDELQYDSTDEKLYEDEDLLNRSTEHKEEEEEDIKPIILNGTIDEENDKTIGDIYQVKVQGSMVTIEKLTSGDIEDTKEVVEYQEVEHEEQEEQEEQEEQEEQEEQEVQEEQDVQDVYNDQEQLEQIDQVDPDDPDQIEQVEYLEEEMLELPNNHVTPTKTRRKISRSPSNALKCKLCSEMFSSAISFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWSRKRPNNMLFPCAACGFVCRSKHSLQSHFIRKHTDRYEHQCKFCPKKFKVKGDLTNHIRFHHKEKPINCPVCGKLCQNTGSLYVHQKWAHFKPKYECHICKRRMVTQENLDQHLLTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGCKPHSCLICNKPFARRSQLRQHLLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADIVKEFTEGYVQEISARENEERIEEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418482;
- 90% Identity
- iTF_00224025;
- 80% Identity
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