Bmus018148.1
Basic Information
- Insect
- Bombus muscorum
- Gene Symbol
- -
- Assembly
- GCA_963971185.1
- Location
- OZ020138.1:3228912-3232925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1.3 10.2 0.0 1 20 86 105 86 107 0.95 2 19 0.056 6.2 8.1 2.3 1 21 124 144 124 145 0.96 3 19 0.00014 0.015 16.3 3.0 2 23 180 201 179 201 0.94 4 19 0.0002 0.022 15.8 2.2 1 23 205 227 205 227 0.97 5 19 0.00018 0.02 15.9 0.6 3 23 235 255 234 255 0.97 6 19 3.2e-05 0.0035 18.3 3.6 2 23 262 283 261 283 0.96 7 19 0.12 13 7.0 2.5 1 19 292 314 292 316 0.73 8 19 0.18 20 6.5 0.2 3 23 322 341 321 341 0.95 9 19 0.49 55 5.1 2.3 3 13 349 359 348 362 0.89 10 19 0.021 2.3 9.4 3.3 1 23 448 470 448 470 0.97 11 19 2.5e-06 0.00027 21.8 1.8 3 23 481 502 480 502 0.96 12 19 0.00015 0.017 16.1 4.9 1 23 508 530 508 530 0.98 13 19 0.038 4.2 8.6 0.4 1 23 534 556 534 556 0.97 14 19 4.8e-06 0.00053 20.9 1.5 3 23 564 584 562 584 0.97 15 19 1.4e-05 0.0015 19.4 0.2 1 23 590 612 590 612 0.98 16 19 0.085 9.4 7.5 0.9 1 23 618 640 618 640 0.97 17 19 1.6e-06 0.00018 22.4 0.1 3 23 648 668 646 668 0.97 18 19 1.3e-06 0.00014 22.7 0.6 1 23 674 696 674 696 0.98 19 19 1.6e-07 1.7e-05 25.5 2.0 1 23 702 724 702 724 0.99
Sequence Information
- Coding Sequence
- ATGCTTTTAACAACGCGAATATTACAGAAATCTGACGTCGAGCTTTTTTCCAAGTTACGTTCTTTCCGCATGCTTTTCATGGCTGTGTGCATTTTGTGCAACAAAACAGATTTAGCTTCGAAGATAAAACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCGTCCAACGAGGAAGCTCGATCGTTTGTGAACAAAGTGATCGATAACTCTCACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTCGACACGGAGGCTGCTCTGTTGGTACACAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTGAAAAGAAATACACGTGTGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGCGAAGGacaaaacgataaaaacgaaACGGAAGGAACCGAATGTTTCTACTGGTCCGATCGAGTGCAACGTGTGTCATAAAGtttttaagaagaagaaatatctaaATGTTCATAAAACGTTGCATGGAGCGCCTCATATTTGTCACGTATGCGGTGCCAAATTGACTtctgaatattatttgaagATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAAGTGTGTAACAAGGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAATGATAAACCGTGCATTTGTGAGGTTTGTCACAAGTCTTTCGGTAATAGAGTTTATTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAAAATAGGAGGAAGTACAGATGCGAAATTTGTGGGTTCGAGACTTTCTACAGTTACTGTTATAAGGAACATCTGTGGACGCATACGGGAGAAAGTCAGGTGGCCTGTGAGGTTTGCGGTAAATTGATCAGAAGACAGTATATGAAGATTCATATTAGAATACACACTGGTGAGAAGCCGGAGATCTGTGAATTTTGCGGCAAAGCATTTAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTCAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGACACGTTAGAAGAAAGTGACGACGTGGAGATGAAACTGATTCTagaggaagaagagggagAAGAAACAGGGAACGTTAACGGAgattataacaataaatacagGAGGAGAAAACGCTCGATCATTTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAGAAGTTTCAATTTCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCACTGCGAGGAATGTGATAAAAGTTTCACGGATGAAGAGAAATTGAAGAAGCACATGATCAAAGTGCATCAAAAGGAGAAACCTTTTCAATGTGTTCTCTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACCTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCGTttacataaaaagaaacataacgAGGAATATGTGACGCACTGTGAAATCTGCGGCAAAGGCTTCTACACGAACCAAACCTTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGCAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCACATGAAGTCTCACGGCGAACGAGAGAAACACAAgtgtaatatttgtaatttcgaAAGTTACTGGAAGGCGGCTCTAAAGGTGCACCTTAAGATACACACTGGAGAGAACCTGATCGCCTGTGAGATGTGCGGGAAATCAGTCTCTAGTAAAGCTTATCTGCAGATTCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTCGAAAATATCTGGTTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAAGTATGTCAGAAAAAGTTCACGCAGCAGGGTTCACTGAATTCGCATATGAAATCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MLLTTRILQKSDVELFSKLRSFRMLFMAVCILCNKTDLASKIKPKSVKTIPAKRNQSRTAKSSNEEARSFVNKVIDNSHVVQEASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKEPNVSTGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSNDKPCICEVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESDDVEMKLILEEEEGEETGNVNGDYNNKYRRRKRSIIYECDVCNKKMRKKFQFLKHRQDHERNYEETGGHCEECDKSFTDEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLIACEMCGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLVVHLRTHTGERPYECKVCQKKFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -