Basic Information

Insect: Bombus lapidarius
Gene Symbol: prdm10
Assembly: GCA_936014575.1
Location: CAKXZU010000031.1:1243230-1246993[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0054 0.38 11.2 0.2 2 23 523 544 522 544 0.95

2 11 0.0005 0.035 14.5 0.3 2 23 557 578 556 578 0.96

3 11 0.0089 0.63 10.5 3.8 1 23 595 617 595 617 0.91

4 11 0.0058 0.41 11.1 2.6 2 23 626 647 625 647 0.96

5 11 0.0003 0.021 15.1 0.3 1 23 654 676 654 676 0.98

6 11 0.00065 0.046 14.1 1.8 1 23 683 705 683 706 0.95

7 11 0.00039 0.027 14.8 1.7 1 23 711 733 711 733 0.98

8 11 2.3e-05 0.0016 18.6 4.1 1 23 739 762 739 762 0.96

9 11 0.0016 0.12 12.8 1.7 1 23 795 818 795 818 0.97

10 11 3.6e-05 0.0026 18.0 2.4 1 23 840 863 840 863 0.97

11 11 0.0037 0.26 11.7 3.4 3 23 901 922 901 922 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0054	0.38	11.2	0.2	2	23	523	544	522	544	0.95
2	11	0.0005	0.035	14.5	0.3	2	23	557	578	556	578	0.96
3	11	0.0089	0.63	10.5	3.8	1	23	595	617	595	617	0.91
4	11	0.0058	0.41	11.1	2.6	2	23	626	647	625	647	0.96
5	11	0.0003	0.021	15.1	0.3	1	23	654	676	654	676	0.98
6	11	0.00065	0.046	14.1	1.8	1	23	683	705	683	706	0.95
7	11	0.00039	0.027	14.8	1.7	1	23	711	733	711	733	0.98
8	11	2.3e-05	0.0016	18.6	4.1	1	23	739	762	739	762	0.96
9	11	0.0016	0.12	12.8	1.7	1	23	795	818	795	818	0.97
10	11	3.6e-05	0.0026	18.0	2.4	1	23	840	863	840	863	0.97
11	11	0.0037	0.26	11.7	3.4	3	23	901	922	901	922	0.98

Sequence Information

Coding Sequence: ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTACTAATTCCTTTGAGATAAATAATATCGATAAAGTGTCTAACAATTTAGTAAATTGGTCTACAGATCATTCTTTCTCTTCATCAATGTGCGAACAACAAAAAAAAATGAATAATAATAAACTGTTATTTTTAACTGTGGAATATGTGGAGGATCCATCACGGGAATATTCCCGTTTATTTCCAACATATGAACAAGTTTCCTTTTCTCCTAGACCGTCGTCTCCACTTTCAGATTTTGAACATCGTGTTAGTCCTCTTGACCCCAATATGAGTTCAGCTGCTAGATATTCACCCACTCCTGTACAACTTCCACCATCTCCTTTTCATAATTCTGTTGTTGTATTACAAGATTCTTCTTCTCCTTTAATATCCTCAACTGAATCAAATGAAAGAACAAATGTTAATTATGTTTCTCAATTAACGCATCCAATTGACACACAAAGTGTACAGCAGTCAGATAGTTCTACTGACTATGTTGCTAATGAAAATGAGGAACAACTAGTGTCTAGTGTTGGCAGTGAGTTGATTCTTATGCAAGAAACGAATTCCGGGCTAGAATCAGCAACAGCTCCATTAATGCTAACAGGAATGCCAAGTACGGATTTTACATTAAGTAGAGATTTTCTTGTTATGCAAGATGACCAAATGAATGTTATAAATTCGTTTAAAACACAAAACCTTGATGTAGATGATTCTACACATCTTTCATCAAATGCAGAAAATTCAAATAAAGAAAATAATGCAGATTCTTCAGCTGCATCTAATGAACGGGAAATTAATGAAATTTTAATACCTACTGAAGAAAAAAAAGATTGTGAAAAAAAGAATGTGAGACGTTCGAAACGTCGTATAAATGATAAAAAGAATTTATGTTGTGACGAATGTGATGATGTGTGTACTGGTGATAATTGCACTTCACATAATGTATGTACAATAGCAGATCAACCAGTACCATCTCGTGCTATAGCAACACTGCCAGGATCATACCTTTCTATAAACAAATTATCCAATTCTGAAATTATATCTGGTGGATCAGATTATGGAGTGTTTGCAAAACGTTATATACAAAAACGTACTCAATTTGGACCTATAGAAGGTGTCTTATATCCTTATGATGGTACACCATTTAGAGATGAATTGCCATTGCTCTATGAAACTGAAAATAAAGAATTTTTAAAAGTAGATGTTTCAAATGAAAATGCTTCAAATTGGATGCGTTTTGTTAGACCTGCATTAACTTATAAAGATCAAAATTTGGTAATTTGTCAACAACGTGATGGAATAGTATTTTTGACTACAAGAAGTATTTTACCAAAGGAAGAATTAAAAGCTGGTCCTAGTACTGACTATGCAATACGTAGAAATTTAATACCACTCAAATCTACACAAGAAACGAAGGATGATAAAGAGCACAAAAATCAGATATCTAGTTGGTCACGGCTAGATGATAATCATTCCCGGCGTATGAAAGTATTTCGCGGAAGAAATTTGAAAGAGAAAGAAAATTCAAGACAAAATAATTCTAAGGAATGGAAATGTTCTGTTTGTGGCCTAATTTTTCGAAAATCACTCTTGCTTAACTTACACTCTCTTGTTCATGGTTCTGATAAAATAAAAACTAAAATTCAATCTACAGTTTGTCCGCAATGTGGACTGCAATTTCAAAAACAAAAAGAATTGATCAATCATATTTCACAACATGGGAGATTATCTTTGAAAAAAGCAAAAAGATTGACTTCTTTGTCTACATATAAGTGTTCAATGTGCTATAAACGTTTTGCGACAAAAGTACGTTTACAGCAGCACTGCTTAGTGCATGGTGCTGAAGACCAAAAACCACTGCCATGTAATATTTGCTTTAAAAGGTTCATGAATAATTCAGCACTCTCTTGTCACTTGAAAACACATAGAGAAAATAAACTAATATTTGAATGTCCAATGTGCCGACAACTATTTAATCAAAGCATAACGTTAAAAGATCATATTGAAACTCATAAAAATGAAGATGGCACATTTAGCTGTCCTTACTGCCAAAGAATATTTATCAAATATTCGGTTATTCGTAAACATATTAGAGCACATCATTGTGAAAGAAAACACAAATGTCAAATTTGTGCAAAACGATTTGCTACAGTAGATAAATTACAGATGCATCTGCTGAAACATTCCGATCATAGAGAATTTCACTGTGCAAATTGTGGTAAACAATTTAAGAGAAAAGACAAATTAAAAGAACATATGACTAAATTACATAATTCACAGACAGCCACTGAAGAACAAATGTCGCAAGTTACACAAACTAAAAAATTTGTTCCAAAGGTAAGCCCTAATGATTACAATCGTTTCATTTATAAATGTCACCAATGTTTGGTGGGTTTTAAACGAAGAGGAATGCTTGTAAATCATTTGGCAAAAAGACATCCAGATGTTGCGCCAGAATCTGTACCAGAGTTAAACTTACCAATTTTACGTCAAACGAGAGATTATTATTGTCAATATTGCGATAAGGTCTATAAAAGCAGCAGTAAACGTAAAGCACATATCATGAAAAATCATCCAGGAGCTGCTTTACCGCCGAGCAACCGACAAAAGGAGTCGGATTACTCCGATTTACCGAATCCAACATTTAGTCAAACTGTCGGTAGCATTACTACTACACCACAGGGTTGTCAATGGTGTCATAAACAATATGCTAGTAAAGCAAAACTTTTACAACATCAACGAAAGAAGCACTCAAATTTAATGGAACCGGCTGATCAAGTACCGCGTTCACGTAATCGACAGCCACAGAATCAAAATCAGCCCCCAATACTTATTGAAGATCACTTTGTATTGTCCGATTATATTCAGACGTGTGAAACAAATTCAGATTTTTTTAAACCAAGAATAATCAAAATATCTGATGATGTTGATCTAATAGGCAATGGATTAGAGATAGTTGGGCAACAATTTGTTCGTATGCGTGACATACGCTGA
Protein Sequence: MDPRGPPEGAPTNSFEINNIDKVSNNLVNWSTDHSFSSSMCEQQKKMNNNKLLFLTVEYVEDPSREYSRLFPTYEQVSFSPRPSSPLSDFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVVLQDSSSPLISSTESNERTNVNYVSQLTHPIDTQSVQQSDSSTDYVANENEEQLVSSVGSELILMQETNSGLESATAPLMLTGMPSTDFTLSRDFLVMQDDQMNVINSFKTQNLDVDDSTHLSSNAENSNKENNADSSAASNEREINEILIPTEEKKDCEKKNVRRSKRRINDKKNLCCDECDDVCTGDNCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSNSEIISGGSDYGVFAKRYIQKRTQFGPIEGVLYPYDGTPFRDELPLLYETENKEFLKVDVSNENASNWMRFVRPALTYKDQNLVICQQRDGIVFLTTRSILPKEELKAGPSTDYAIRRNLIPLKSTQETKDDKEHKNQISSWSRLDDNHSRRMKVFRGRNLKEKENSRQNNSKEWKCSVCGLIFRKSLLLNLHSLVHGSDKIKTKIQSTVCPQCGLQFQKQKELINHISQHGRLSLKKAKRLTSLSTYKCSMCYKRFATKVRLQQHCLVHGAEDQKPLPCNICFKRFMNNSALSCHLKTHRENKLIFECPMCRQLFNQSITLKDHIETHKNEDGTFSCPYCQRIFIKYSVIRKHIRAHHCERKHKCQICAKRFATVDKLQMHLLKHSDHREFHCANCGKQFKRKDKLKEHMTKLHNSQTATEEQMSQVTQTKKFVPKVSPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESDYSDLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHSNLMEPADQVPRSRNRQPQNQNQPPILIEDHFVLSDYIQTCETNSDFFKPRIIKISDDVDLIGNGLEIVGQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00232789;
90% Identity: iTF_00983779;
80% Identity: -