Bimp000726.1
Basic Information
- Insect
- Bombus impatiens
- Gene Symbol
- -
- Assembly
- GCA_000188095.4
- Location
- NT:358224-367153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00058 0.036 13.7 1.6 1 23 790 812 790 812 0.97 2 11 0.027 1.7 8.5 0.0 2 23 903 924 902 924 0.95 3 11 0.034 2.1 8.2 0.3 3 23 1098 1118 1096 1118 0.95 4 11 0.0014 0.09 12.5 0.3 1 20 1202 1221 1202 1223 0.94 5 11 10 6.2e+02 0.4 0.6 2 22 1248 1269 1247 1271 0.65 6 11 0.036 2.2 8.1 0.2 1 23 1291 1313 1291 1313 0.97 7 11 2.2 1.4e+02 2.4 1.7 1 13 1320 1332 1320 1343 0.80 8 11 0.014 0.88 9.4 0.1 1 23 1362 1384 1362 1384 0.96 9 11 0.32 20 5.1 1.5 1 19 1842 1860 1842 1862 0.94 10 11 3.6e-05 0.0023 17.5 1.3 1 23 2033 2055 2033 2056 0.96 11 11 0.12 7.4 6.4 0.7 1 23 2058 2080 2058 2080 0.95
Sequence Information
- Coding Sequence
- ATGGAAATTTCTGATGAAGATTTGTTTTCTTCACTTCATTCGGTTGATAATTACTCAGAGCAAGTAATTAACATGTCATTACCATTACCAAAGCCAAAACCTAAAGGTTCTaatgcaaaatacaaaaaaatccAAGATACTAGTTGTTATATATTCAGGAAAAGATTAAGAAGTAATAGGTTGAAACAATTGTTAAGAAGAGGAGATACATTAGAGGATTTGTGTAAATTATTGTGTAAGCCAGTTATTGTGaacgttacaaaattatcaGTATCAGAGATAAAGCAATGGTGTAAAAAAGACTTGCATCAATCTcaagcaaaaaatatattaacacagaaaaagaaatttaaacgaaagataCCACGAACAAGATtcagtaaaagaaagaaaaagtccAAACAGAAGCAGTTATCTTGCTTAtgtaactatgaaaatgaagttAAACCTCAAAATATGTCATTTTCCAAGAAAGCAGAGATtggaaataagaattttacaaaaaatttattagaagatGTTAAACAACcacatataaaattacaaagaatagATGAAGTAATCAATAAAATAGCACAGTCATTTGCAAGAGTAACTCCGATTAATGAATGTGAAACAATTATTCAAACAGAATGTGGAACAAATATTCAATCTGAATGcgaaacaaatattcaaacaagATGTGAAACAAGTGTTCAAACAAGATGTGAGACAAGTATTCAAACAGAAGAAACTCAAACTGAATTAAGTACATCTGCACCAGAACAACTAAAAGTATCATCTGTAAATATCGATACAGATAAATATCAACGAAATCTTAAAACTGAGACAGTAGCAATTAGGTCTCATGCAAATGAGACTCTACAATTGAATAAATGTGCAGATTCagatttagatttagattCAGATTCAGATTTAGATTCAGATTCAGATTTTGATTCTAATACTGGAAATTCTAGAAATACTAATGAAAGGAGacatagaattatatataattctcaTACAGATGATAACAATCGTTATAATAAGAGCAATGCAAATAATGcaagaataattttgaataaattaaagagGTTAAGGAGAAATTCATCAAAAAATACAAGCAAAATTAACCTagtaaacgaaaaatacaatattattaagaaaagatgtacagataaaaattcattgcttCAAGCACCACAAAAACCAAGTATATTAGACCGTATATCAGCGCTATGTGATcctgatgatgatgatgataatgaaaGTACTATGGAAGGTAATACTCTCAGTTGTGTGCcttcaaaattaaatcttgaatgtattatagaaaatgGTACTTctgtaaaaggaaagaatgaaGATGCTATGACTATAGAGAAACCAATtgtagaaaacaaaaatattgaagaacAAATACAAGAATCATTTCCTTccgatagaaattttacacaaagatataaattgtttaaagaattaaaagtttttttaataaaatttgatgctCTGAAAGACTCCAATACTACATATTCAgcaaatgaaattgagaaaatggCAGAAAGTTTTACGAATTCTTACgtgaatttaaattcttcaaaacTCCAAAATAGTaatgaaaaatctataaataatgCATCATTTACTTCAATCTTTTCAAAAGATTCTAATGTTAACATTGAGAAATCTACAGATGCTACAAAACATGTTTCAAGCTCAAGTATTGATAGCATTCCAAATAAAGATGTTTATACAACTACCAAAAGAACACAAAgcacaattaaattattatcaaattcttCAGAAAAATTATCTCCGAATTTAATCAGAAATGCAAAGATACAACAAGAGAGGAGTTCACAAATTCAAAAAGTTTGtcataatttaacaaaaatttttgaagACAGTTCTAAAAAAAGGTTTGCACAGAATACTATTAGTAATATAAAgcagaaattaattgttccaATCCCTACTATCAAAtctactttattatattcttcacAAGAATCTATCAATAAAACTTCTGAATTATCAAATGTGGTAGAAAACATTGATAATATAGACAAATCTACTGGTAAAACGATCTccttaaagaaaaagataccAAAGATTTCTCCACGTAAGGAGAATTCTATGAAATTGGTTATTGATGCAAGATCTCAAGAACAAGTGGGAGTTGATACATCTGGTGTTACTAATTTCAAATTGCatctttcaaagaaaaataaaaaacatgaGTCAGAGAAACATACATTTGCACCTAAAACATGTGGAAAAACTATGAATGTTACAACTACTAAAATAGCTACAAAGAAAAGTGCTTCAACTTCTTATTCTTCCATAGTATCTCCTAAAAGACATAAGAGACTTAGAGATAATCTTGGTTATAAATGTATTGTTTGTGATTTTTGTTTTGAAGATTATTCTGATTTACAACAACACCTAATTACACATACACAAAAGCAAAATAATAGTTTAGCAAATTCATTGAAAACTTCCAATATGTCACCTGAAAAATCTCAGGACATGATATCTCAATCCTCAAAAGCAAGGATATCAGAACCACCACAAGTGTCAAGTGAGCACAGGAGTGGAGAACATACAGCATCACAATATGTCACCAAGAAAGATAATGgacaacaaaagaaaaaagatgctATAACAAAAAGCTCACTGAgtaaagaaaagaggaaaaggaggaTTAAGCATATTAGTAATTCAAATAAGTGTAATGTTTGTTCAAAACCTTTTGAAGCAATGGCTGATTTGGCAGCTCATATCTTCTTACATACAGAGAGAGAATTGCAACAAGCATATAAACTcgcaaaacaaaaattgaatggaatagaaaaatataaacaaactaGAATTCAACAAACAGCTAAcagtattaaaaatgtaaatagcaCTGTAAATACTGcagataatataattgaaaggACTCAGAAAGTTAATGATAAGGAAGAAACGTTGCTTATACAGAAAccaaataaatcattaattacaGAAGATTCAGAAATAAGAGACACAGAATCTATTACTGTGAAAGAAAACTATTCGCAAGATATAGAATTATGTCTGCCAGCAAAATCGAAAAAAGATGGTAATAAAAAATCGTTCACAGTATGCGAATGTCATAATAAACCAGGAactaatgaaaattgtttgcaaATCGAAATAGTTCTTCTTTGTCACACTTGCAGGGTGCTATTTAGAAGTATGAAATGTTTCGAAACCCATTATCGTCTTCCcgaatatgtaaaatgtaatcAAAACCACTTAACTAGTGGTCGTTctccaaatttattttgtgcTACCTGTGGTATGATATTTAGTTCAGTTCAAGATGTGCGTCATCATTTAGAAATACATGCTCGTTTTAAAAAAGACTGCACAATGGATTTTCGATGCAACATTTGCAAGGTTATATTCCTAGGAATAGGAAGTCTTTTTTATATCCATTGGTCAAAGCATTCCAGAGATTCTTTTTGGATGGCTAGTGAGAAATCATTTCCAAAAGATTCCATAATAAACTCGAAGCTGAGAAAGGCAGAGAATTCTTCTACACAAAATGCAATGACTTTGAGTACGTGTgtagaaaaatacattgaaGTAGCAGAACATGTCTGTTATAATTGTAAACTGCCTTTTATTACTCAAGATGATTTAAAGAATCATATTTCagaatgtagaaaatttaagtCAGTTCAAGATGCATCTATTGCAGAAAACTGTAATACATATCTCGCAATAAGGATAACTTGTAGTTTATGTGATGatacttttattaacaaaaaagcagaattttataaacatataaaagataaacatAATTTGAGTATCGAACCTCGATTTATTTGTACATCATTCACGGCTGGAAATATGGTATTTATTTGCAGTATCTGCACGGCAATGACTAAAAGTTTAGATGACTTTGAGGATCATTGGTTGAAACATAATACAACTCatgtatattttacttgttcgcattgtagtaaaatatatcacaacAGCTTAAATTCCTTCATAGACCATGCTAAAAGACATGGTATTGATGCTAATGATGTAATGTCCTGTGTAGTAAATTATgaacaaacaaaattcagttgtaaattttgtaatattggTTTTGATTCTCCTCAAAGTATGCAGGAGCATGCTATTATTCATAACACAAACAGCCAACAGATAGGTCCTCAGATCAGTCAAGTTACAAATCAAAACAGCTCTGCAACAGTATCAGAGACAGATCGTGCTTCCAATTCTGCAAAGCTGGTTGAATCGACTATTGAAAAGCTGATGGATGGATCATTACAAATGGAGACTCAAACAATGGAAAAGGCAAGCGAAATTTGTCCAATAGAATCTAGTATAGACAAAAGTAGGGACGAATTAATCAAGATATTAGAAGGAAATGAAGATGATTCTGAAcatgaattaataatagacTTGACAAAACAATCAGAAGAATGTAATGAAGgattaaaagaagaaggaagtaAGGAAAGACAGACTACATCTAATCTTACATTAGATAAATCTCCTATCAATCAAACTTGTGTCATGTCGGAGAATAATAAAGCTAATGCATTGGAAACAAATGCAAATGTCCAAGTATCTTCACAAAATGTTGCAAAATCTGAAACTCAAAATGTTACAGATTCTCTTTTTACTGCTAAAAACATAAATCCTCAAATATCTAATTCAAACATTAagtctacaaatattttgcaaacaaTATTGGTTTCAAATAATGTTAGTAATCATAATAATCTACtagatatagaaaaaaaaacaagtgACCAATCAATCACAAAAGATATAGAAAGTACACAAAATGTTGAAGTTCATGACAGAGtttcaattataaatcaaGAAGAatcaacaattttaataaaagaaacatcaGAGAAACAAAGTCCACCAAGACCAAAACAAGGGTTCTTAAGAGTGAAAACTCTTGCAGAGCTTACAGGTTCTGCAAATTTATGTGAATTTAACAATTGTGCTGTTGAAAACACTAATGAATTAGCCAAACACTTCAAAAGTCATCATGCTTCGAACAAAGATAATAACGAACATAAAACtacagaaaaagaattagTTTCAAAACAAtctgaaataaacaaatttattgctaataaaaaattaaaaattgttcctaatacaaattcaaatacaTTACTATTATCTTCACCTAATTCAggcaatataaaattagtgATTCAGAATCCAGTTATGAAATCTAATACtacagtaataaataatcaacaaCCACAGCAATtccaaataaatacaaatcaaAACAAACACTCATCTTCTCTGGAGAATGTAACATCAGCATATCATAAAAACTTACCAGCttgtaatttcgttcgaacaacCACAGCTATGCCACGTTTTACTATTTTGAAACCTACCAAAGTAATAGCACATACTGCTAATATACCGAATGTACAGAGAACACATGTAGCATCCTGTTCTaccaatgaaaataaacaaaggTCTTCTTCTGCAAAAAAGAATTCAAATCGTGCTATACATAAGTGTAATCAttgcaattttgtttcaaataattctgcAGAATTCTTAATGCACAATTTACCAGGAAATCATTCAACTTGTAAGAAGCAATATTCGCAAAATGGTACCCAGGTgcaaaaaattaacaaatttgataattcACAAACAATACCCACAATTAATACTATTCAAAACAATCCAAATCCCAAACGATGTCAACAAACTACTATGAAGCAACCAGGGATTAACTATGCGTCTTCATCTGTCTGTAATCAATATTCTTATCTTGCTGCAGGCACTTCGAATAATAGTAATCAAATGCTTAAACAAAATCAACCAATAATAGCTAATCATCCAATAACAGGAAATACCACCcctatttattatacaaaaccaAATCTTAGCAATGGTAGAATGTCAATAGTGATCAATCAAACTACACCTACTGTTCAAAATATACCCACAATAGGAATCCTGCAACAACCAGCGCAGCAACAAATATATCAACAACAGGATTTAGTTCAATTTTCTGAATCGAACGCTGTTTTCCAACTGGCAAATCAACCAAGTGTTACAACTTATCAAGTTAGATATATATGTCCTTattgttcgaaaaattttgtttctgaaGACTATatgcaaatacatataaataagcaccacaattttatatgtaatatttgtaatttgcgtttatacaattttaacgatttaaatCTTCATAAAATTCAGCATAATTTGTTGTAA
- Protein Sequence
- MEISDEDLFSSLHSVDNYSEQVINMSLPLPKPKPKGSNAKYKKIQDTSCYIFRKRLRSNRLKQLLRRGDTLEDLCKLLCKPVIVNVTKLSVSEIKQWCKKDLHQSQAKNILTQKKKFKRKIPRTRFSKRKKKSKQKQLSCLCNYENEVKPQNMSFSKKAEIGNKNFTKNLLEDVKQPHIKLQRIDEVINKIAQSFARVTPINECETIIQTECGTNIQSECETNIQTRCETSVQTRCETSIQTEETQTELSTSAPEQLKVSSVNIDTDKYQRNLKTETVAIRSHANETLQLNKCADSDLDLDSDSDLDSDSDFDSNTGNSRNTNERRHRIIYNSHTDDNNRYNKSNANNARIILNKLKRLRRNSSKNTSKINLVNEKYNIIKKRCTDKNSLLQAPQKPSILDRISALCDPDDDDDNESTMEGNTLSCVPSKLNLECIIENGTSVKGKNEDAMTIEKPIVENKNIEEQIQESFPSDRNFTQRYKLFKELKVFLIKFDALKDSNTTYSANEIEKMAESFTNSYVNLNSSKLQNSNEKSINNASFTSIFSKDSNVNIEKSTDATKHVSSSSIDSIPNKDVYTTTKRTQSTIKLLSNSSEKLSPNLIRNAKIQQERSSQIQKVCHNLTKIFEDSSKKRFAQNTISNIKQKLIVPIPTIKSTLLYSSQESINKTSELSNVVENIDNIDKSTGKTISLKKKIPKISPRKENSMKLVIDARSQEQVGVDTSGVTNFKLHLSKKNKKHESEKHTFAPKTCGKTMNVTTTKIATKKSASTSYSSIVSPKRHKRLRDNLGYKCIVCDFCFEDYSDLQQHLITHTQKQNNSLANSLKTSNMSPEKSQDMISQSSKARISEPPQVSSEHRSGEHTASQYVTKKDNGQQKKKDAITKSSLSKEKRKRRIKHISNSNKCNVCSKPFEAMADLAAHIFLHTERELQQAYKLAKQKLNGIEKYKQTRIQQTANSIKNVNSTVNTADNIIERTQKVNDKEETLLIQKPNKSLITEDSEIRDTESITVKENYSQDIELCLPAKSKKDGNKKSFTVCECHNKPGTNENCLQIEIVLLCHTCRVLFRSMKCFETHYRLPEYVKCNQNHLTSGRSPNLFCATCGMIFSSVQDVRHHLEIHARFKKDCTMDFRCNICKVIFLGIGSLFYIHWSKHSRDSFWMASEKSFPKDSIINSKLRKAENSSTQNAMTLSTCVEKYIEVAEHVCYNCKLPFITQDDLKNHISECRKFKSVQDASIAENCNTYLAIRITCSLCDDTFINKKAEFYKHIKDKHNLSIEPRFICTSFTAGNMVFICSICTAMTKSLDDFEDHWLKHNTTHVYFTCSHCSKIYHNSLNSFIDHAKRHGIDANDVMSCVVNYEQTKFSCKFCNIGFDSPQSMQEHAIIHNTNSQQIGPQISQVTNQNSSATVSETDRASNSAKLVESTIEKLMDGSLQMETQTMEKASEICPIESSIDKSRDELIKILEGNEDDSEHELIIDLTKQSEECNEGLKEEGSKERQTTSNLTLDKSPINQTCVMSENNKANALETNANVQVSSQNVAKSETQNVTDSLFTAKNINPQISNSNIKSTNILQTILVSNNVSNHNNLLDIEKKTSDQSITKDIESTQNVEVHDRVSIINQEESTILIKETSEKQSPPRPKQGFLRVKTLAELTGSANLCEFNNCAVENTNELAKHFKSHHASNKDNNEHKTTEKELVSKQSEINKFIANKKLKIVPNTNSNTLLLSSPNSGNIKLVIQNPVMKSNTTVINNQQPQQFQINTNQNKHSSSLENVTSAYHKNLPACNFVRTTTAMPRFTILKPTKVIAHTANIPNVQRTHVASCSTNENKQRSSSAKKNSNRAIHKCNHCNFVSNNSAEFLMHNLPGNHSTCKKQYSQNGTQVQKINKFDNSQTIPTINTIQNNPNPKRCQQTTMKQPGINYASSSVCNQYSYLAAGTSNNSNQMLKQNQPIIANHPITGNTTPIYYTKPNLSNGRMSIVINQTTPTVQNIPTIGILQQPAQQQIYQQQDLVQFSESNAVFQLANQPSVTTYQVRYICPYCSKNFVSEDYMQIHINKHHNFICNICNLRLYNFNDLNLHKIQHNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218063;
- 90% Identity
- iTF_00226877;
- 80% Identity
- -