Basic Information

Insect: Bombus impatiens
Gene Symbol: Snai1
Assembly: GCA_000188095.4
Location: NT:875940-882766[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.3 3.9e+02 1.0 0.1 3 15 65 77 63 80 0.73

2 13 0.0039 0.24 11.1 0.2 1 23 236 258 236 258 0.95

3 13 9.8e-06 0.00061 19.3 1.2 1 23 266 288 266 288 0.98

4 13 3.9e-06 0.00024 20.5 0.2 2 23 296 317 295 317 0.97

5 13 1.1e-06 6.9e-05 22.3 0.7 1 23 323 345 323 345 0.99

6 13 1.2e-05 0.00077 19.0 2.6 1 23 352 374 352 374 0.99

7 13 2.9e-06 0.00018 21.0 0.6 1 23 380 402 380 402 0.96

8 13 7.3e-06 0.00046 19.7 0.1 1 23 408 430 408 430 0.98

9 13 4.1e-07 2.6e-05 23.6 1.2 1 23 436 459 436 459 0.96

10 13 2.1e-06 0.00013 21.4 0.5 1 23 465 488 465 488 0.96

11 13 8e-07 5e-05 22.7 2.1 1 23 494 516 494 516 0.99

12 13 5.3e-05 0.0033 17.0 0.4 1 23 522 544 522 544 0.94

13 13 9.7e-05 0.0061 16.2 0.1 1 23 550 574 550 574 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.3	3.9e+02	1.0	0.1	3	15	65	77	63	80	0.73
2	13	0.0039	0.24	11.1	0.2	1	23	236	258	236	258	0.95
3	13	9.8e-06	0.00061	19.3	1.2	1	23	266	288	266	288	0.98
4	13	3.9e-06	0.00024	20.5	0.2	2	23	296	317	295	317	0.97
5	13	1.1e-06	6.9e-05	22.3	0.7	1	23	323	345	323	345	0.99
6	13	1.2e-05	0.00077	19.0	2.6	1	23	352	374	352	374	0.99
7	13	2.9e-06	0.00018	21.0	0.6	1	23	380	402	380	402	0.96
8	13	7.3e-06	0.00046	19.7	0.1	1	23	408	430	408	430	0.98
9	13	4.1e-07	2.6e-05	23.6	1.2	1	23	436	459	436	459	0.96
10	13	2.1e-06	0.00013	21.4	0.5	1	23	465	488	465	488	0.96
11	13	8e-07	5e-05	22.7	2.1	1	23	494	516	494	516	0.99
12	13	5.3e-05	0.0033	17.0	0.4	1	23	522	544	522	544	0.94
13	13	9.7e-05	0.0061	16.2	0.1	1	23	550	574	550	574	0.94

Sequence Information

Coding Sequence: ATGACAGCTGATTCAGAAAAAGATAGTACTCATTGTTTGATATGTAACAGTAAAGTTGGTGTATCTACTAGGAATAGTATACGAATCTTTAATGAAAACTCTGTAACATCGTCAGAAAAATCACTTGTAGATGCCATTTGTACTGTCTTAGAAACAGATTTGAATGAAGAGAATGTACATTCTCTtgttatatgtaaaaaatgttataaattatttaatgagATTGATGAACTTGAAAGTCGACTGACAGaggtaaaattagaattatttaataactacaagaaaactattaaaaagatatctgATATGCaaaatgaagaagaatatAATGATCATGATTAcatagaaaatacagaaagtcAGGATATAGATGGAGAAATTAGATATATACAAAAGGATGAATCAGAAATTCAAGGGATAGAaggggaagaagaaagaatagaggaagaagaagaggaaccTTCTTATGAACCagaggaaattattttgaaagttGAGGCCATACCAGAAACAAGCGGTactgaagaaagaaagaggataaAACGGGCAAAAATTACACCAAAAATTGAACCTTCCCAAGAGCGAaTTGTTACTAGAGATGGCTCTATATATAGCTGTTTGTTATGTACAAATGAAGACGATAAAGCTGTAGGAGATGCAAAGTCTATTATCGCTCATGTAAGGAGTGTGCACGAAACTCGTTTATATATTTGCGACATATGCGGGGATGactttaaaaagagaaatcaaCTATCTATTCATCTTGATGATCATGTTGCTAAAGAGGAAGGAGATTTTCAGtgtgaaatatgtaatagaatatttagtaatttgcGGTTGTTTAGGATTCATAAAAGAATACATTATCCACAAGTGAAATCTTGGCCGTGTGAAACTTGTGGTAAACGATACAGTTCTAGAAATTTATTGGAGGAACATATTAATACACATACAGGTGTACGCCCATATGTATGTGAAAATTGTGGTAAAGATTTTGCTTcaaaatatacttataaaGCACACGTAAAAACACATGAAATACGACCTCGTCCTTATCAGTGTTCACAATGtaacaaaacatttttgaGTCAACAAAATCTTAATCAACATGAAAGAACTCATAATGGTGTAAAGGAGTACGTTTGCCACCAGTGCGGAAAAGCCTTTGGTTCGCCACATAATTTAGAAGTACACAATATAGTACATACTGGTTACAAGCCATACATATGTAGAGTATGTGGTAAAGCATTTGCCCGTAAAGCTGAAATAAGGGACCATGAAAGGACACATACTGGAGAGAAACCATATCAGTGTGAATTTTGTGGAGCTACATTTAGTCAACGATCAAATTTACAATCGCACAAGCGTGCAACGCATTATAATGATAAACGGTACAAATGTGACGATTGTGGAAAAGGATTTAAACGGCGGAGATTATTAGACTATCATATAAAAGCAGCTCATACCGGTGAAAGACCGTACAAATGCGATATATGTACAGCAACATTTGTATATCCCGAACATTTCAAAAAACATATGCGTATACATACTGGAGAGAAACCTTATCTCTGCGAGGTTTGTGGTAAAGCATTTAATAGTCGAGATAATAGAAATGCGCATCGGTTTATACACAGTGATAAAAAGCCGTATGAATGTCTAGTATGTGGTATGGGTTTTATGAGAAAACCTTCGTTGTATGCTCATATGCAAACTCAGgGACACTTAAATGATACCATTGTGGTGAATCAACCGCGTCTCACTACGGAAGATGATCAAGTCATAACAATTTCTAATGGCAACGTGGAACTTTTAGTAGATGAAGCGGAAAATGACCAGttgGATGAAACTGAACTATATGTGACAGAGTTAAAAGATCATGTTATCATACAGCAGCAAAATGAGGATCAAATGTATAATGAAGAAGacgtattaaatattccagCAGAGGAAAATGTTGCGGACGAGGAAGTAAATCATCTCGTTGATGGAGAAATGAACTTCGCTGAAAATGAAGTGATAGAATGTAAAACTGAAGATTCGGAGCAAGTAGAAGAGGTATATAACTATAATGAAACGGAAGATGGGGAAACAATAGTTGTACCAACTACCTCAGAGTACAAAGAAgcggaagaagagaaaaatgctGTACGATTAGTACAAATTCGATTTCCAACATCGGTTGGTGGTGAAGGCCGAAGTTGGTTAAGCTTAGTACAAAACAcgtga
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNSIRIFNENSVTSSEKSLVDAICTVLETDLNEENVHSLVICKKCYKLFNEIDELESRLTEVKLELFNNYKKTIKKISDMQNEEEYNDHDYIENTESQDIDGEIRYIQKDESEIQGIEGEEERIEEEEEEPSYEPEEIILKVEAIPETSGTEERKRIKRAKITPKIEPSQERIVTRDGSIYSCLLCTNEDDKAVGDAKSIIAHVRSVHETRLYICDICGDDFKKRNQLSIHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHVKTHEIRPRPYQCSQCNKTFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDICTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPSLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITISNGNVELLVDEAENDQLDETELYVTELKDHVIIQQQNEDQMYNEEDVLNIPAEENVADEEVNHLVDGEMNFAENEVIECKTEDSEQVEEVYNYNETEDGETIVVPTTSEYKEAEEEKNAVRLVQIRFPTSVGGEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00230172;
80% Identity: -