Basic Information

Insect: Bombus impatiens
Gene Symbol: ZNF236
Assembly: GCA_000188095.4
Location: NT:603961-616045[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.0021 0.13 11.9 1.4 2 23 177 198 176 198 0.95

2 26 7.8e-05 0.0049 16.5 1.1 1 23 204 226 204 226 0.98

3 26 2.3e-06 0.00015 21.2 0.4 2 23 232 253 232 253 0.97

4 26 0.0062 0.39 10.5 0.3 3 23 261 281 259 281 0.96

5 26 5.1e-05 0.0032 17.0 0.9 2 23 292 313 292 313 0.98

6 26 5.6e-07 3.5e-05 23.2 1.1 1 23 334 356 334 356 0.99

7 26 2.2e-06 0.00014 21.3 0.8 1 20 362 381 362 384 0.95

8 26 2.1e-05 0.0013 18.3 0.7 1 23 390 413 390 413 0.95

9 26 0.002 0.12 12.0 2.2 3 23 424 445 422 445 0.97

10 26 1.4e-06 8.8e-05 21.9 2.1 1 23 568 590 568 590 0.98

11 26 0.00024 0.015 14.9 3.3 1 23 596 618 596 618 0.99

12 26 0.036 2.3 8.1 1.6 1 23 624 646 624 646 0.97

13 26 0.0021 0.13 12.0 6.7 1 23 737 759 737 759 0.98

14 26 2.5e-05 0.0016 18.0 5.1 1 23 765 787 765 787 0.99

15 26 0.0002 0.012 15.2 1.0 3 23 795 815 793 815 0.97

16 26 0.0003 0.019 14.6 7.6 1 23 821 843 821 843 0.98

17 26 1.8 1.1e+02 2.7 1.3 2 23 1241 1262 1240 1262 0.94

18 26 0.00053 0.033 13.8 1.3 1 23 1268 1290 1268 1290 0.98

19 26 0.0053 0.33 10.7 1.6 1 23 1296 1318 1296 1318 0.98

20 26 7.8e-08 4.9e-06 25.9 1.4 2 23 1397 1418 1396 1418 0.98

21 26 0.00055 0.034 13.8 3.5 1 23 1424 1446 1424 1446 0.99

22 26 7.1e-05 0.0044 16.6 1.9 1 23 1452 1474 1452 1474 0.98

23 26 0.00029 0.018 14.7 2.5 1 23 1480 1502 1480 1502 0.98

24 26 6.8e-06 0.00042 19.8 0.4 2 23 1727 1748 1726 1748 0.97

25 26 1e-05 0.00063 19.3 4.5 1 23 1754 1776 1754 1776 0.98

26 26 2e-06 0.00013 21.4 1.1 1 23 1782 1805 1782 1805 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.0021	0.13	11.9	1.4	2	23	177	198	176	198	0.95
2	26	7.8e-05	0.0049	16.5	1.1	1	23	204	226	204	226	0.98
3	26	2.3e-06	0.00015	21.2	0.4	2	23	232	253	232	253	0.97
4	26	0.0062	0.39	10.5	0.3	3	23	261	281	259	281	0.96
5	26	5.1e-05	0.0032	17.0	0.9	2	23	292	313	292	313	0.98
6	26	5.6e-07	3.5e-05	23.2	1.1	1	23	334	356	334	356	0.99
7	26	2.2e-06	0.00014	21.3	0.8	1	20	362	381	362	384	0.95
8	26	2.1e-05	0.0013	18.3	0.7	1	23	390	413	390	413	0.95
9	26	0.002	0.12	12.0	2.2	3	23	424	445	422	445	0.97
10	26	1.4e-06	8.8e-05	21.9	2.1	1	23	568	590	568	590	0.98
11	26	0.00024	0.015	14.9	3.3	1	23	596	618	596	618	0.99
12	26	0.036	2.3	8.1	1.6	1	23	624	646	624	646	0.97
13	26	0.0021	0.13	12.0	6.7	1	23	737	759	737	759	0.98
14	26	2.5e-05	0.0016	18.0	5.1	1	23	765	787	765	787	0.99
15	26	0.0002	0.012	15.2	1.0	3	23	795	815	793	815	0.97
16	26	0.0003	0.019	14.6	7.6	1	23	821	843	821	843	0.98
17	26	1.8	1.1e+02	2.7	1.3	2	23	1241	1262	1240	1262	0.94
18	26	0.00053	0.033	13.8	1.3	1	23	1268	1290	1268	1290	0.98
19	26	0.0053	0.33	10.7	1.6	1	23	1296	1318	1296	1318	0.98
20	26	7.8e-08	4.9e-06	25.9	1.4	2	23	1397	1418	1396	1418	0.98
21	26	0.00055	0.034	13.8	3.5	1	23	1424	1446	1424	1446	0.99
22	26	7.1e-05	0.0044	16.6	1.9	1	23	1452	1474	1452	1474	0.98
23	26	0.00029	0.018	14.7	2.5	1	23	1480	1502	1480	1502	0.98
24	26	6.8e-06	0.00042	19.8	0.4	2	23	1727	1748	1726	1748	0.97
25	26	1e-05	0.00063	19.3	4.5	1	23	1754	1776	1754	1776	0.98
26	26	2e-06	0.00013	21.4	1.1	1	23	1782	1805	1782	1805	0.97

Sequence Information

Coding Sequence: atgttgACGCGACACAGTGTAGTTACAGAATCACCTTCACATGTCGATACAATACCTATAAATCTCGTTGCTACTGAGGATGGCCGAACGCTTTTAGCAGTAACTGAACATAAAGACGGTATGTTGGAAATTGTTGCAACTCCAGTTATGCTTGTTGGACAAAGTGAAGCAGCATCGCCGCTAGtagatgtaaaaaattttaatggaaatctAATATTACACTCGCCTGTTTTTCAAATAAGCGTTGAAAATATTGTCAATGAGTCAGAACTTCAGCAATCAACACAAAATTTTGAGACTGAGCCTAATAGCATTGATCAAATACCATCATGCAGAGAATTAACATGCAAGGAAACAGTTACGCAAGAATATCAGTCTCTTTCTTCGAATGATTCAGTAGCTAGCGAAAaggatggaaaaatttgtaaacagAAGCCAATTAATACATCTGTGAAAAAAAATAGCCCTGGAAGGCCCAAGAAAAACAAAGCAATTTCTTTGCAAGTAATTCaaGACACAGATAGTTTAATATGCGATATTTGCCATCAAGAATTTGGTAAACAAACATTATATCGGAAACATATGGAAAATCATGCAGAAGAAAAACCACATCGATGTCCAAAATGTTCTGCATCGTTCAACGTGCCGACAAATTTTACACTTCACATGGCAACGCATAATACAGGTGAACCGAAATGTCCAGAATGTGGgaaaaaatttgcaagaatGGCTAGCTTAAAGTCTCATATGTTGTTacatgaaaaagaagaaaacttaTTCTGTACAGAATGCGAAGATGCTTTCTCAACAAAGACTCAATTAGATGCACATTTAAAGCTACATGGGGAAAAGTGGACGGTTGAAGAAGtacgaaaatgtaaattatgtaataaacaGTTCAGTCAACCCGCCTTATATAGACTTCATATTCGTGAGCACTATAGGTTGCAGACAAAAGTagtaaaacaaacgaaaagaGGGACAAAACACAAAACAATGTATAAGTGTACCATATGTTTGAAGTCTTTTCAAAAGCCAAGTCAATTGATGCGGCATATTAGAGTGCATACTGGTGAAAAACCTTTCAAAtgTACAGACTGCGGTCGTGCATTCACGCAAAAGAGTTCGCTGCAAATTCATACGTGGCAACACAATGGTATTCGACCTCATGCTTGTGAGTTTTGCAATGCCAAGTTTAGTCAGAAagGTAATTTGAATGCTCATATAATGAGAGTTCACAATGTCCCAGAGGGAGAACCTATATACGGATGTAATTATTGTTCATGCGTGTTTAAAAAACTCGGCAGTTTGAATGGTCACATGAAACGTATGCATACCAATGTAAATGAGGAGAATAGCATTAATGACAATACTCATTCGAGTAATACCATGGAGTCTGATATACGTTCAACAGTTGATAGTGTTATAACACAACTGGCATCTTTAGAATCCGACATTCATCAGACTACAGAATCGTCAAATTTCGAACCGCGTTTATTATCGGAAAACGTAACGAAAAAGGATATTTTACAACAAGCATTGAAAAACAGTGGTCTTcctagtaaaaataaaattgcttctGAAGAGATAAAGAAGTTTGGAGCTCGTgttaattttgtaacattattGGATCGAGCGCCTGATGGTGATACGAGaaaatatttgacaataaaACAACGATGCGTAGGAAACGTGAGATGGTACGCGTGTACATTTTGTCACAAAGAATTCAAAAAACCATCAGATTTGATACGCCATTTGCGTGTTCATACGCAAGAAAAGCCTTTTAAGTGCACCCACTGTTATCGTTCGTTCGCTTTGAAATCTACTATGATAGCACACGAACGTACGCATTCAAGTGTTAAACGTTACGCTTGTGGTTCCTGCGAGAAAGCATTCGTGTGCCATAGTAGTTTAATTGCACATACTAGATTGCATGCAAAGTCcgaaaattgttcaaataaaaCCACTGACAATGATAAGGATCCCGACACATATGCAGTAATTGATGCTGACATTTATCCCACTGATCAatcgaaaaatcaaataaagggtaaattaaaattatcaccGGAAGCAGAAAGCTTGGTTCCTCAAGTTATCTTGCAAGAACCGTTGGTAATTAGTGAtacaggaaataaaatttccgtGGTATCTTCGGGAAAGGAAAAACGTGCTTATGATACATCTACTGATCATGCCAGACCCCACAAATGTTGGATTTGTCAGGCGGCATTTAGAAAGATCAGTCACTTGAAGCAACATCATCGCCGCCACACTGGAGAACGTCCATATAAATGCACAAAATGCGATAGGAGATTTACATCGAATAGTGTTCTAAAATCGCATTTGCATACTCACGAAGATTCGAGACCATACGGTTGTTCTCTTTGTAATGCGAAATTTTCTACACAAAGCAGCATGAAAAGACACTTGGTTACTCACAGTAATAAAAGACCGTTCATGTGCCCTTATTGTCACAAGACTTTCAAAACTTACGTCAATTGTCGGAAACACATGAAAATACATAAGCATGAACTGGCACAACGGCAATTGGAACAACAGAAAATCAGAATACAAGAACAAGCTTCAGACAAGTCAAATATGAAGGAAAGTTCTAAACAAGAAGCGGCTCTTGAATcgtcttcctcctcttctgcCTCTATCACTACAATTAATTCCACTATTACCAGCAACATCTCCGTTACTACCACTGCCACTACCAGTACCACCCCTACCACCGTCACAACTTCCTCTTCTACGTTTTCAGATAATCTTGCACTTTCTCGTCTTGGATCGGTTGAATTATCATTTCAATCGCAGCTCGGATCAGAGCTTTCACAAGCTTTTCCcgagtttcaaaatataactgaaggaaaggaaaaaataagacCAGTTTTAGCAACAAATTGCGATACTACAACGTTTATTAATCaaaatgtagCGGGAATAGCTGTAACAAATCTTGAAAATTCACCAATATTACAAGCTGATGAAGCTGGTTCAGTCACGTTGCCCGTTTACTCTGGCGATCAGACACTTACACCGGAAAGTATAcgagaaatagaagaaactttAAATCAACAGTTTTTTAATATCGGGATGAATCTTAACTTGGGAGGTAATCACTCGAGACATTCGAGTAGTACAAACACGAGTGATTTTAGTCATATGAAAGAGCAACAGCAACCTGTATTGAAtgttatatatgaaaataataataacagtaacTGTAATAGTAACGTAGAATCAGCTGGAGAACATGTATTTTCGACGCAATTAGATTCATTTGAGATGGACCATATTACTTTGCAATCGGATACTGAAATTGACATTGGACTAGATACAAGAAATTCAACTAGTATGGCGAGTATACTACCTAGAAATGTAAAAGATGAACATCGTCTTTCTGTTTGTGTTACAACACCAGATAACATAAATGTTGAACAATCAGAAAAGTCTGGTGTGCAAGCAGTTGTATTTGTTTCCCAGCCAAACTTCTCcaaaaaagagaatataacAAATGAATTTACTGTAGAAGAAACCCAGAAGAACAGTATTCACAAACAATGTATAATCAATCCGATATTCTTTACAGAAGACTTTCGGGGAACATCACAAGATTTCAAGATTCAGTCAAATATGCACGCTTTGTCATCCGATGTTCCAGAAATCGTTAAAACCGCTACGGGCAAAATATCCCGTGGACAATCTCTATTACAGTGTCACATGTGTAGCCAACAAGGATTCACGACAGTTGGTTTaaagGAACATTTGACAAGCCATCGCGGAACGAAGGAATATCAGTGCACAGAGTGCTCTTCTAAATTTTACACAAATGGTGGATTAAATAGACATTCGAAGATTCATGTCGTCAAGCAACcatttaaatgtttatcgtGTGAGAAGCAGTTTAACAATAGGATCCAATTACTATCACATAGTAAAATTCATGAAACTTCAATATGGAATGCTTCAGGGATAACTGATAATTCAGATAATTCGACGTTTTTATCGGAAGTGCATCAACCGCGGATTGCAAATGATCATTCAccattacataatattatgataGAACCCGATTCTGCCGTTTCTGAGAAAGTTCTGTTGGATACAGTAGCTGAAAAAGAAGTAATGGATCAAGTAGAAATTTTGCtggaaaagaaggaacgaaaagAGTATACaaacaaatgtaaatattgtcCGAAAACTTTTCGCAAGCCAAGCGATCTTATAAGACATGTACGCACACACACAGGAGAACGACCATACAAGTGCGATTATTGCAGTAAAAGTTTTGCCGTAAAATGTACTTTGGATTCTCATACAAAAGTTCATACGGGAAAAAAGACATTTCGCTGCCATGTGTGCAATAGTTTATTTGCGACTAAAGGTAGCTTGAAAGTTCACATGCGTTTACATACCGGTTCGAAACCATTTAGATGCCCTATATGCGATTCGAGATTTCGAACATCCGGCCATAGGAAAGTACACTTATTGAAACATGCACGCGAACACAAAGATAATCcaaagagaaaacaaagaCATTTGAAGGTTGCAGTCATAGCTGAAGTAGCGACTGATCTTGAGAAATGTGAcggaaaggaagagaaaatgaataattttgagCCGAAGCAGCAAATAGCACAGGAACAGCAGCTATCACAGGCAGTTGCAGGATTAACGTCCCATTTAGAGGCATATAGTATTGAAACAGCTGCTTCCTGTTTATCtgatcaaattaatttcgatgcAGAAGGTATCGTATCGAACAACAATCAAACGATAGTGTCCATAAACGAAAACAATCAGTTAGTTACGAATTTACACTTTCTTCTGACAAATGGTCTTGTTACTATACAAACCGAAGAATCGTTGTTATCACAATCATCTGCATCACCAGCTAACAATTCGCAGCATCGACCGGCTGGGGTTCCCGATACTGGGTGTGCACTAACAACATCTAGCGTCGTATCTGATACTAACGAACAACATGCCAAGGATGAAATTCATATAGAACAAATGTTAAAAACGCCAGCAAATAATTGTCTTTTAGCAATATCAACCGTGACACCTTCATTGGAACGACAGCTGGAGCCATTTTCAAAGGTGATTACGGAAGAAACGTTACCAGTAGTAGCCAATAAACCGACGATTAAAGGGAATCCATCGAAAAAGGAATGCGACATTTGtgggaaaatatttacaaaaccGTATCAAGTCGAAAGACATAAACGAATTCATACGGGTGAACGGCCATACAAGTGTGATCTATGTACAAAATCATTTGCCCAAAAGTCAACTCTACAGATGCATCAAAAACACCACACTGGCGATCGACCCTACGCTTGTTCGTACTGTGAATATTCTTTTACGCAAAAGGGCAATCTTCGAACACATGTTAAACGCGTACATCAACTGGATACTGTTGACATCAGGAAATGGAAACGTAGCCGTCAATCCTTCCTACCTAAAACATCTCTTCAGGAAAACACGATCGAAGCTAAGAGTCTAAATTTAGACAACATATCGTTTGTAGAGCTGCTTAAATAG
Protein Sequence: MLTRHSVVTESPSHVDTIPINLVATEDGRTLLAVTEHKDGMLEIVATPVMLVGQSEAASPLVDVKNFNGNLILHSPVFQISVENIVNESELQQSTQNFETEPNSIDQIPSCRELTCKETVTQEYQSLSSNDSVASEKDGKICKQKPINTSVKKNSPGRPKKNKAISLQVIQDTDSLICDICHQEFGKQTLYRKHMENHAEEKPHRCPKCSASFNVPTNFTLHMATHNTGEPKCPECGKKFARMASLKSHMLLHEKEENLFCTECEDAFSTKTQLDAHLKLHGEKWTVEEVRKCKLCNKQFSQPALYRLHIREHYRLQTKVVKQTKRGTKHKTMYKCTICLKSFQKPSQLMRHIRVHTGEKPFKCTDCGRAFTQKSSLQIHTWQHNGIRPHACEFCNAKFSQKGNLNAHIMRVHNVPEGEPIYGCNYCSCVFKKLGSLNGHMKRMHTNVNEENSINDNTHSSNTMESDIRSTVDSVITQLASLESDIHQTTESSNFEPRLLSENVTKKDILQQALKNSGLPSKNKIASEEIKKFGARVNFVTLLDRAPDGDTRKYLTIKQRCVGNVRWYACTFCHKEFKKPSDLIRHLRVHTQEKPFKCTHCYRSFALKSTMIAHERTHSSVKRYACGSCEKAFVCHSSLIAHTRLHAKSENCSNKTTDNDKDPDTYAVIDADIYPTDQSKNQIKGKLKLSPEAESLVPQVILQEPLVISDTGNKISVVSSGKEKRAYDTSTDHARPHKCWICQAAFRKISHLKQHHRRHTGERPYKCTKCDRRFTSNSVLKSHLHTHEDSRPYGCSLCNAKFSTQSSMKRHLVTHSNKRPFMCPYCHKTFKTYVNCRKHMKIHKHELAQRQLEQQKIRIQEQASDKSNMKESSKQEAALESSSSSSASITTINSTITSNISVTTTATTSTTPTTVTTSSSTFSDNLALSRLGSVELSFQSQLGSELSQAFPEFQNITEGKEKIRPVLATNCDTTTFINQNVAGIAVTNLENSPILQADEAGSVTLPVYSGDQTLTPESIREIEETLNQQFFNIGMNLNLGGNHSRHSSSTNTSDFSHMKEQQQPVLNVIYENNNNSNCNSNVESAGEHVFSTQLDSFEMDHITLQSDTEIDIGLDTRNSTSMASILPRNVKDEHRLSVCVTTPDNINVEQSEKSGVQAVVFVSQPNFSKKENITNEFTVEETQKNSIHKQCIINPIFFTEDFRGTSQDFKIQSNMHALSSDVPEIVKTATGKISRGQSLLQCHMCSQQGFTTVGLKEHLTSHRGTKEYQCTECSSKFYTNGGLNRHSKIHVVKQPFKCLSCEKQFNNRIQLLSHSKIHETSIWNASGITDNSDNSTFLSEVHQPRIANDHSPLHNIMIEPDSAVSEKVLLDTVAEKEVMDQVEILLEKKERKEYTNKCKYCPKTFRKPSDLIRHVRTHTGERPYKCDYCSKSFAVKCTLDSHTKVHTGKKTFRCHVCNSLFATKGSLKVHMRLHTGSKPFRCPICDSRFRTSGHRKVHLLKHAREHKDNPKRKQRHLKVAVIAEVATDLEKCDGKEEKMNNFEPKQQIAQEQQLSQAVAGLTSHLEAYSIETAASCLSDQINFDAEGIVSNNNQTIVSINENNQLVTNLHFLLTNGLVTIQTEESLLSQSSASPANNSQHRPAGVPDTGCALTTSSVVSDTNEQHAKDEIHIEQMLKTPANNCLLAISTVTPSLERQLEPFSKVITEETLPVVANKPTIKGNPSKKECDICGKIFTKPYQVERHKRIHTGERPYKCDLCTKSFAQKSTLQMHQKHHTGDRPYACSYCEYSFTQKGNLRTHVKRVHQLDTVDIRKWKRSRQSFLPKTSLQENTIEAKSLNLDNISFVELLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215155;
90% Identity: iTF_00217878;
80% Identity: -