Bimp006124.1
Basic Information
- Insect
- Bombus impatiens
- Gene Symbol
- bab2
- Assembly
- GCA_000188095.4
- Location
- NT:868163-886388[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.4e-13 1.1e-09 37.0 0.0 1 39 637 676 637 680 0.90 2 4 2.1e-12 4.2e-09 35.1 0.1 2 39 692 729 691 732 0.94 3 4 6.1e-19 1.2e-15 56.1 0.0 2 45 747 791 746 791 0.97 4 4 6.9e-19 1.4e-15 55.9 0.1 1 42 798 840 798 841 0.97
Sequence Information
- Coding Sequence
- ATGTTACAAGACAGACCAACGCCCGGCCTTCTTCGTAGCTTTCACAGTGTCGCGTATTCGCACCGATAcgtatcgtttattttctccGCGAACATCTTCACCGTGTATTACCGGCATTTTTCTCCGTCTTACCGTTCACGTCTCTTCCTCCTTTCCGTCAAACGAGCGAACGTTGCTGACGTTATCGCGACGAAGCTTCGTGTCGTTCGTCGTACGTCGTTCGTCGCTCGTCGTTCGTCGATGCTTTATTCTCGATCCTCGATCCTCTACACGCGTGCCTCGATTCTCCATTCTAGATCATCGTTTCCATCGTTGTTCACGTTGTCGTCGTTGGTCAAACCGCGAAAGTGTTTCTCCATATCGTTGCACCGCGAAAACAGCGACTGGTTGTGCACTGTCCGCTGCCGCTACCAACAGTTGGCTTCTTCTCTTTCCGATCggtctttatttttcttgactCATCCGCCTCCGTTCCCTTCGGCCACTCGCGCTCCATTCGTTCCACTCTTCGATCCTCTTACCGATCTCTATCTATCTTTCTTATTCTCTTCTCCACCGGTTTCTCGctatctctttattttctcagCCACCGCAAATACGATCTCGACCGAACGATCTCCGCGCCGCCGATACTGTGCCGGAAAGGAGAACGAATATTTCATGGAGACGGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAATAACTATCAGTCGAACATGACGTCCGTTTTCCACCAACTACTTCAGACGGAAGCTTTCGTCGATGTTACCTTAGCATGCAACGAAGCTTCTTTAAAGGCACACAAGGTGGTACTATCGGCGTGCAGTTCCTACTTTCAAAAGCTTCTACTTTCAAATCCCTGCAAACATCCGACAATCATTATGCCCCAAGATGTGTGCTTCAATGATCTCAAGTTCATTATAGAATTCGTCTATAGAGGAGAGATCGACGTTTCGCAAGCGGAACTTCAGTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGGCATCATCCAAGGTATAAGAGGCCCAGAACCACGTTCGAGCCTCGCGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGCAGCAGTAACAATAGTACCACTACTGGCACCAccaataataacaataacaacaacaacaacaacaacaacaacaataataacaacgCTAGCAGCAACGGCAACGGTAACAATACGagcaacaacaataacaacggtgACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACGATTACACATTTAAGGGACTCGGATCATCATTCCACAGAGATCCAAAATTGTGACAGTGTAAAGATCAAGTTTGAAACATTGCACACGATGGATTCGTCGGAcacgatcgatatcgatagCCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGCTCTCACCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGACACTCCAAAAAAAGACGGACCTACTAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGTTAGAAGCGTTACGGACTGGAACGATATCGGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCTGCGCCATTCAACGCGAGTCCCACGACGTGGTCGCCCGCCGATCTAGATCGCGCTCTCGAAGCGATACGTTCTGGTCAAACGTCAGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGAACATTATATGGTCGATGCAAAAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTAGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTACAACTTGCCCTACTCTTCCTTATACGGTCGCTTCAAAAgaggaaaatacgaagaacCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGTCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MLQDRPTPGLLRSFHSVAYSHRYVSFIFSANIFTVYYRHFSPSYRSRLFLLSVKRANVADVIATKLRVVRRTSFVARRSSMLYSRSSILYTRASILHSRSSFPSLFTLSSLVKPRKCFSISLHRENSDWLCTVRCRYQQLASSLSDRSLFFLTHPPPFPSATRAPFVPLFDPLTDLYLSFLFSSPPVSRYLFIFSATANTISTERSPRRRYCAGKENEYFMETDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRSSNNSTTTGTTNNNNNNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00221993; iTF_00230773; iTF_00230613;
- 90% Identity
- iTF_00230773;
- 80% Identity
- iTF_00221993;