Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026163.1:5829855-5834691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0031 0.28 11.8 0.2 1 23 159 182 159 182 0.95

2 9 3.5e-06 0.00032 21.1 2.3 1 23 187 209 187 209 0.99

3 9 6.7e-07 6.1e-05 23.3 0.6 1 23 215 237 215 237 0.98

4 9 0.0033 0.29 11.7 0.8 3 23 245 266 243 266 0.93

5 9 1.3e-05 0.0011 19.3 1.1 1 23 272 294 272 294 0.93

6 9 5.7e-06 0.00052 20.4 1.1 1 23 300 322 300 322 0.98

7 9 0.00076 0.069 13.7 5.3 1 23 328 350 328 350 0.96

8 9 7.3e-08 6.6e-06 26.4 0.8 1 23 356 378 356 378 0.98

9 9 0.0018 0.16 12.6 1.3 2 23 387 408 386 408 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0031	0.28	11.8	0.2	1	23	159	182	159	182	0.95
2	9	3.5e-06	0.00032	21.1	2.3	1	23	187	209	187	209	0.99
3	9	6.7e-07	6.1e-05	23.3	0.6	1	23	215	237	215	237	0.98
4	9	0.0033	0.29	11.7	0.8	3	23	245	266	243	266	0.93
5	9	1.3e-05	0.0011	19.3	1.1	1	23	272	294	272	294	0.93
6	9	5.7e-06	0.00052	20.4	1.1	1	23	300	322	300	322	0.98
7	9	0.00076	0.069	13.7	5.3	1	23	328	350	328	350	0.96
8	9	7.3e-08	6.6e-06	26.4	0.8	1	23	356	378	356	378	0.98
9	9	0.0018	0.16	12.6	1.3	2	23	387	408	386	408	0.96

Sequence Information

Coding Sequence: ATGGAGAACAGGCCGGCGCCGCTCAGGTCCAGGCGGGTCTGTCGATTTTGCCTAACCGAAACTGAACCACTTTCCTTTATCTATGAAAGAGATCATAGTAAACCATTTCAAGTGCCACTTACACTGCAGATTATGTCGTGCGTCGCCATCGAGGTGTATGCAGCTGATGGAATGCCACAAATGATATGCGGTATGTGTCGTTGGAATTTGGACAGATCTTATAAATTTAAGCTTCAGTGCAAAAAAGCAGATGAAGCGTTGAGAGCTTATCCATTGTCTGGTGTCTTACCAAGACCATTTCCACCGATTCCAAATGATCCTCCTGATATGAACAATAAACGACCTTTGGAGCAAAGATCTCAAAACGAAGGAAATAAAAAGCCTCGAGAGGAACAAGATGCAGGCAGCGAAGGTGATCAAGATACAAATAGTACTAAAGAGGAGCGAAAATTAGAGCCAGGCGAGATAAGAGTACATGCATGTGATCAATGTGATCGTACGTTTCCACTACGACAGGCTCTTGCTTTGCACGTTCAACGAGCTCATCGCGACCGTAATTATAAATGTACAGAATGTGATCGTATGTTCTTTTCTAAATATGATCTTGGGAAACATATGACTACGCATTCAGAAGAGAAACCATTCTCTTGCCCGATATGTAACAAACAATTTTCAAGGGCGAATTTGTTGCAACGCCATGAAAAAGTTCATAGAGATGAATTGCGTTATGGCTGTCAGCATTGTGATCGCGAATTCTTTACAACCGAAGAATTGGAAAAGCATGAGGATTCCGTACATAAAAAGGAGAAACCTTTCCAATGTAACATTTGCAACAAACGTTTCACGTACAAACAGGGTTTAGAACGTCATGAGGTACTACATAACGAAGATAAGACTTTTGTTTGCGAATATTGTAAGGAAGCGTTCCGTACAAGTACGAAGCTAGCTCGTCATTTAACGACGCATGCTGGACATCGGCCATATTTATGTAAACTATGCCCGCGTTCATTCCTTCTATCTCATCATTTAACTAGACATATGCGAACACATTCTGTAGAAAAACGACATGTCTGCGAAGATTGCGGTAAAGCATTCAAGCGTAAAGAGAGTTTGGAGGTACATCAATTAACGCACACAAAACGCACAGGTATGGGATTGACGTGTGATGTCTGCCAGGAATCATGCAGAAATAGGGCAGATTATGTCACACATATAAAACAACATATTGAAGCAGGTGAAAAAATGGGACCAGATGGACTACAGCCCGATAATAAAACTAAACTTGATTTGGATTCTGACGAAGATGAAGAAGAGGAACAATATTCAGATGGAGATGATGATTATGAGCCACCAGCATATATTGTGAAAAAGCTTCCAAAACCGCTTAAGCCGTCAGAAAGCGAAGAAGAACAAGAAAGATCAGAAAAGGAGGAAAATCAAAAAGAACAAGTTGTATATGTAAGACATAAAGATGGAAATATGATTAAAAAGACAATTAAAACTTTGATGCCTATTCAGCGTAGAGAGGTACAAGACAGCAAGATAAAACAAAGTCCAACTACCAACCAATCTCAATCAGCTACAAAACCTCCACAGTCTAAACAAAATGAAGAACCTTCAAAGTCTTCCCGCGTTGATGAAACGGAAGCACAAGTTCAAAAAATTGTTGCATCTGTGTTTAAGGAGCATAAGATACCTCTGAAACATCAAAATGTTCAAGAACAAAATAAAGAACCATCTACACCTGCGAATCAATTAAGACCTCAACAAGGACAAAGTAGTTCACAAAATCAAATTTCTACCAAGGACGAAAAATCTGAAATTCCTATAGCGGTCAGTAATACACCAAAAGCTGTAAATACAGTCAAAGTAATAAAGAGAATCGTTGTGAGGAAACCTGGTAATACTGAGACTAGTACATCTACAGTAAAAGATGAAGATGCAACAGGTAGCACTTCTCAAACATCTAGTACAGGTCACAAAGTAACGAAAAGAGTAATTGTTCGTAGAATTATTCGTCAGGGAGATACTACCCGAGAAGTTATTATGAATCCTGATGGTACGATAATCGATCCGGCAGAATTAGCGAAGCTACCAACTGGTAATGTTGTAAAGAGAGTTGTCGTGAAGAAGCCACTTGATAAACACCAAAGTTTGGTTCAAGCGGTGTTGCAGTCAACTACGGATATTCGACAACCAACTACTACAATAAAAAATAACGATACAGTACTAAGCGAATCTCCGAAATTTGAATTAAAAACATCTCAGTCCATAAATGCATCGTCTTCGGTTACAAAAACAACTGTATGTCCTGCATCGAAACCTGCATTAACGGTAGGGGATCAAGAAACTAAAGAAAAATTGGAGCAGCTCGAAAAGAGAGTCGAACAACAGCGCTTAAAGATTGAAGAATTAGAGGCTCGTAAGCAACAAGAATATGAACCTATTGAAGAAATGTCTCCTGAACGTCACGACGAATCCGACGATGAACAGCAATTACCATTAAAAAGAGTGTTTGTAAAGAAAAAGCAAAGTATGTACGATGAAGAACAAGAATATAATGACAATGACGTAGCAATAACTTCCGTGACGACCTCTGTAACAACTCCGGCAACGACTCCAATAACAACAATAAAAATAGATGACATTCAACCTGAACCAGAAAAGGAGAAAGAAAAAAAAGAAACATCGGAAGTGGAAGAAATGAGTCGGGAATTGTGTAGTATATTGGATTCAGCTGATTCTGTAGTCAAGATGCAAGAAACAGTTTTAAGTAACCTCACCCAAATATCTTCTATTGGAGAATGTTCTCAGAAAAACTATAATGATAAACCAACAGCTGGGCCATCTATCTCTGAGGATTATTCAGAGAAGGAAGAGGCTGTTGTTGAAACTACTTCTCAGGATCAAGAAGTAGATATTAAATTAGAGAACACTGAACCCATGGATGTGTCTGATCCCCAAGAATCTGATATTAAAATGGAACCAGTATCTCAAGAACAAGTTATGGAACAACCCGAACAAAACTCAAATTTGACTTTAGATGAACAAGATCTTTCAGAATCAACAGATATCTTTGAACCATCGGATAATGTACTAGAGGTACAAAAGAGTCAATTGGACGATTCCGTAATAGAACTCGAACATGGAAGTCACGCAATCAGTTTAAATGACACTAATGACAGTCAAGATAGTCTCGAAGACAAACTTCAACAAATGGAAGGTTGA
Protein Sequence: MENRPAPLRSRRVCRFCLTETEPLSFIYERDHSKPFQVPLTLQIMSCVAIEVYAADGMPQMICGMCRWNLDRSYKFKLQCKKADEALRAYPLSGVLPRPFPPIPNDPPDMNNKRPLEQRSQNEGNKKPREEQDAGSEGDQDTNSTKEERKLEPGEIRVHACDQCDRTFPLRQALALHVQRAHRDRNYKCTECDRMFFSKYDLGKHMTTHSEEKPFSCPICNKQFSRANLLQRHEKVHRDELRYGCQHCDREFFTTEELEKHEDSVHKKEKPFQCNICNKRFTYKQGLERHEVLHNEDKTFVCEYCKEAFRTSTKLARHLTTHAGHRPYLCKLCPRSFLLSHHLTRHMRTHSVEKRHVCEDCGKAFKRKESLEVHQLTHTKRTGMGLTCDVCQESCRNRADYVTHIKQHIEAGEKMGPDGLQPDNKTKLDLDSDEDEEEEQYSDGDDDYEPPAYIVKKLPKPLKPSESEEEQERSEKEENQKEQVVYVRHKDGNMIKKTIKTLMPIQRREVQDSKIKQSPTTNQSQSATKPPQSKQNEEPSKSSRVDETEAQVQKIVASVFKEHKIPLKHQNVQEQNKEPSTPANQLRPQQGQSSSQNQISTKDEKSEIPIAVSNTPKAVNTVKVIKRIVVRKPGNTETSTSTVKDEDATGSTSQTSSTGHKVTKRVIVRRIIRQGDTTREVIMNPDGTIIDPAELAKLPTGNVVKRVVVKKPLDKHQSLVQAVLQSTTDIRQPTTTIKNNDTVLSESPKFELKTSQSINASSSVTKTTVCPASKPALTVGDQETKEKLEQLEKRVEQQRLKIEELEARKQQEYEPIEEMSPERHDESDDEQQLPLKRVFVKKKQSMYDEEQEYNDNDVAITSVTTSVTTPATTPITTIKIDDIQPEPEKEKEKKETSEVEEMSRELCSILDSADSVVKMQETVLSNLTQISSIGECSQKNYNDKPTAGPSISEDYSEKEEAVVETTSQDQEVDIKLENTEPMDVSDPQESDIKMEPVSQEQVMEQPEQNSNLTLDEQDLSESTDIFEPSDNVLEVQKSQLDDSVIELEHGSHAISLNDTNDSQDSLEDKLQQMEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141374;
90% Identity: iTF_00219291;
80% Identity: -