Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.8e-21 7.4e-18 65.2 0.8 4 88 13 93 10 96 0.90

2 3 0.0004 1.6 8.8 0.0 115 144 95 124 92 138 0.86

3 3 0.093 3.7e+02 1.1 0.1 156 169 232 245 226 245 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.8e-21	7.4e-18	65.2	0.8	4	88	13	93	10	96	0.90
2	3	0.0004	1.6	8.8	0.0	115	144	95	124	92	138	0.86
3	3	0.093	3.7e+02	1.1	0.1	156	169	232	245	226	245	0.86

Coding Sequence: ATGGATATTGTAACAGCATTGCTATGTGTTGAAACATTAGAACACCGGGCAAGTAAAGGCTTACGCTTTCGTTATGAATGTGAAGGCAGATCAGCTGATAGCATATCGGTAAATAATACACCAGAAAACAAAACATTTTCTAGTGTGAGAGTAAGTCAAGCTAAAGTTACAGTATTATATGTAACAAAACATCAGCTCTACAAACCTCATCCTCATAATCGTGTTGGGAAGAGAACGTATAAACGCGGTGTTTATACAATAAAAGTGCCACCAGAAGAAGAGGAATTCCGCATAGATCCCTTTAGAACTAGCTTTGAACATAAGGAGAAACCTACTAGTATTGATTTAAATACATTGCGCCTCAGTCGCCAAAACGGTCGAGGAACGAAAACGACGGCGGCACAAACCTCCCACGGCAACGCCGGGCTGGTGATCGCCACCAGAGGGCCAACGGCGGTTGGACGAATTTCTCTCGCTAGTGGTCGAATTGGCTCCGCATCAGAATATATACCGCAATTAGCGAGACGCCCTCTGCGTCTAAGGCAGGGACTACCGGGCATAGCCTTACTGACGAGTCCGCCGATAGTCCCAGGACGAAACGCGACGAGCGAACCTTCTTCTTTAGGAACCATCTACGAGGATCGGCCAACAACACAACACAACTGTGGAAGCGGGATCAACCGATCCCCTTCAATACCATTACCATCAGTGGTATCTGACCCTATATTTGATAAAAAGGTAATGTCAGATCTTGTGATGTGCGAGCTCAGTCGCTCTAATATGTCAGTGGCTGGTGGTACGAAAATGATTTTATTATACGAGAAGGTGGCAAAGGATGATATGCAAATTAGATTTTCCAAGGAAGAGGACGGACAAGTAGTTTAG
Protein Sequence: MDIVTALLCVETLEHRASKGLRFRYECEGRSADSISVNNTPENKTFSSVRVSQAKVTVLYVTKHQLYKPHPHNRVGKRTYKRGVYTIKVPPEEEEFRIDPFRTSFEHKEKPTSIDLNTLRLSRQNGRGTKTTAAQTSHGNAGLVIATRGPTAVGRISLASGRIGSASEYIPQLARRPLRLRQGLPGIALLTSPPIVPGRNATSEPSSLGTIYEDRPTTQHNCGSGINRSPSIPLPSVVSDPIFDKKVMSDLVMCELSRSNMSVAGGTKMILLYEKVAKDDMQIRFSKEEDGQVV

Sequence clustering based on sequence similarity using MMseqs2