Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8.3e-17 2.3e-13 50.8 0.4 35 95 19 80 13 83 0.92

2 2 2.2e-10 6.3e-07 29.8 0.0 124 169 83 129 79 129 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8.3e-17	2.3e-13	50.8	0.4	35	95	19	80	13	83	0.92
2	2	2.2e-10	6.3e-07	29.8	0.0	124	169	83	129	79	129	0.91

Coding Sequence: ATGGATGTTAGAAGGTCATCGCcatatgttgaaataatagaaCAACCTTTAGAGAACATAACATATCCTGCTATAAGAatagTTAGACACAGAGGTCGAACTAAAGTTGTAGTATCATGTGTAACAGAAGATCAGCCCTATAGACCTCATCCTTATAGCCTCATTGGgggaaaaatatgtaaacacGGTGTTTGTACAGTAGAAGTGTCATTAGAAACTACGATAGTTATATTTACACATTTTGctGGCTTCgaacataaaaaatatgttgcTAGTATTGATTTAAATACACTGCGGTTGTGCTTCCAAGATTTTTTGGAGGGAACACAAAAAGGAATGTTTAATATACCATTAGAACCAGTTGTATCTAAccttatatttaataaacaaGTAGTGGCAAATCTTTCAATATGCGAGCTCAGTCACTCTAATGCGTCGGTCGCTGGTGACACGAAAATGATTATATTATGCCAGAAGGTGATAAAGAATGATATACAAGTTAGATTTTTCGAGAAGAAGGGCGAGCAAGTGGTTTGGGAAGGATTCGGTGATTTTGTATCTGATAATGTATATAAACAAACAGCAATAGTATTCAGAACACCGGTATATAGCAAGCAGGAAGTGACGCAACCGGTGCAAGTATATGTTCAACTGAAAAGACAATCGGATGGTGCGATAAGTAAATCGTTAACCTTTTCAGATGTCTCCTTCCAATACAGGTATCACTACTCCACAATTTAG
Protein Sequence: MDVRRSSPYVEIIEQPLENITYPAIRIVRHRGRTKVVVSCVTEDQPYRPHPYSLIGGKICKHGVCTVEVSLETTIVIFTHFAGFEHKKYVASIDLNTLRLCFQDFLEGTQKGMFNIPLEPVVSNLIFNKQVVANLSICELSHSNASVAGDTKMIILCQKVIKNDIQVRFFEKKGEQVVWEGFGDFVSDNVYKQTAIVFRTPVYSKQEVTQPVQVYVQLKRQSDGAISKSLTFSDVSFQYRYHYSTI

Sequence clustering based on sequence similarity using MMseqs2