Bcul005898.1
Basic Information
- Insect
- Bombus cullumanus
- Gene Symbol
- nfxl1
- Assembly
- GCA_014737535.1
- Location
- JACXIX010000019.1:3875528-3878275[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1 9.8e+03 -3.2 1.1 15 19 123 127 122 127 0.81 2 19 0.14 1.3e+03 -0.5 0.8 4 10 158 164 157 164 0.95 3 19 5.5e-08 0.00051 20.0 15.1 1 18 172 188 172 189 0.98 4 19 1e-08 9.5e-05 22.4 16.0 1 19 226 243 226 243 0.95 5 19 0.24 2.2e+03 -1.1 0.3 5 10 267 272 267 273 0.95 6 19 6.6e-05 0.61 10.2 10.9 1 19 278 297 278 297 0.91 7 19 4.1e-05 0.38 10.9 9.2 1 18 333 350 333 351 0.97 8 19 0.0068 63 3.8 7.6 1 12 385 396 385 396 0.94 9 19 1.2 1.1e+04 -3.4 1.7 6 10 406 410 406 410 0.97 10 19 7.7e-08 0.00071 19.6 12.0 1 18 416 433 416 434 0.92 11 19 0.95 8.7e+03 -3.1 0.8 6 10 463 467 462 467 0.85 12 19 0.002 19 5.4 10.5 9 19 482 492 480 492 0.90 13 19 0.0025 23 5.2 6.2 1 12 502 512 502 512 0.95 14 19 0.85 7.9e+03 -2.9 5.8 14 18 544 548 544 549 0.89 15 19 0.001 9.3 6.4 8.7 1 12 585 596 575 596 0.91 16 19 2 1.8e+04 -4.4 3.8 6 10 612 616 608 616 0.71 17 19 0.0011 10 6.3 15.0 4 19 626 641 624 641 0.91 18 19 0.12 1.1e+03 -0.2 0.2 3 9 656 662 650 662 0.67 19 19 9.2e-06 0.085 12.9 11.7 1 16 686 700 686 706 0.88
Sequence Information
- Coding Sequence
- ATGCAGAAATTTAGACAAGCTCAAGCAGAAAATAAAATAGCAATTAATAAACATTTAGAAGCAAATGCTTATCTAGAATCTTCCAGTGAGGATGAAGATGATAGAAATGAAGAGGATATACAAAATATAGTTGGAAAAGTAATATCTGCCTACCAAGGCAAAGAGGCAGATGCAGAAAAAATTTTATCATATTTAATTAATATTTTTCAATCTGGCAATGCTGTTTGTTTAATATGTATTTCAACTGTAAAAAGAGCAGATCCAATTTGGAATTGTAACAAGTGTTTTGCTTTCCTACATCTGTCTTGCATTTTGCATTGGATACAGGATAGTTTGAATGTTAAAGGTACCACATCAATATGGGCATGTCCAAAATGTCGTATGGAATATAATCAAGATGACATTCCTCGTAACTATAAATGCTTTTGTAAAAAAACCATAGATCCCCCATATAGTCCATGGAATATTCCACATTCCTGTGGAGAAACATGCGACAAACTGCTGCAACCAGAATGTGGTCACAAATGTGTTTTGCTTTGCCATCCTGGACCATGTCCTCCTTGTGCAAAAACACTATCTATTAAATGCTACTGTGGCAAACAGATACCTCAACAACGACGATGCAATGCCAAAGAATGGAGTTGTGGTACTGAATGTAACAAAGAGTATAAGTTATGTTCACACACTTGCAAAGAAGTGTGTCACTCAGGGGAATGTCCTCCTTGTCCAGAAATATTATTACTAGAATGCCATTGTAAGAGTAACAAAGAATTAAAGCAATGCTCTGAAGGTCTATGGACTTGTAATAAACTTTGTGGCAGACCGCTTTCATGTAATGTTCACATATGTCAAAGTAAATGTCATTTAATTGGCGACTGCGGACCCTGTCCATTGGAGAAGAATAGAACATGTCCATGTGGGAAAAAACGTTATGCCATTTCTTGCAAACAAGAACAGCCACCTACATGTGGAGATACATGTGGAAAATTATTAAATTGCGGTTCGCATTATTGTAATATGAGATGTCATACAGATCGCTGCGGGCAGTGTTTAGAGGTAGTCACAAAATCGTGTAGATGTGGCAGCTATCGGAAAGAAATTGCATGTGGCAAAGAATTTCACTGCAATAAAAAGTGCATGCAAATGCGGTTGTGCGGAAGACATTTGTGTAATAAGAAATGTTGCGACTGCTTGATTAAAAACACATATAACGTGTGCGAAAAAGTATGCGATAATGCTTTAAACTGTCGCAAACACAAATGTGCTGCTCCTTGTCATAGCGGCCCTTGTTATCCATGCGCACGAACTGACGTTATTCAATGTAGATGCGGATATAATAAGATAACAGTACCATGTGGTACAGTAAAAAAGATCAAGCCACCATCTTGCAATAAGCCATGTAAAATACCTCCGATTTGTCATCATCTCAAACGAGAAACCCATAAATGCCATCAAGGTCACTGTCCACCTTGCAAAAAGATTTGCGGCATGGTATATAAACGATGTGGTCATTCTTGTGTAGCTGTTTGCCACACAAAAGTGTGGCTAAAGGTGAGCAGAAATGACATAAAGACGCAACCAGCAGGACCATGGGACATACAAAAGGAAACTTATCAGCTAAAAACATTACCATGCCCACCATGTGAAGTTTCTGTACAAGTTACATGTTTAGGAGGACATAAAACGCGTCCATGGCCTTGTCACATGGCTAAACCTACGTCTTGCGGAAGATTGTGCGGGAAAACATTATTATGTACGAATCATACATGCGAATTGATTTGTCATAAAATACCATCATCTGAAGAAAATAAGAATGGTACCCCGTGTATGGAATGTGAAAAACCATGTTTACTTCCACGACCACAAGGATGCACACATTTATGCTCAGAACCTTGTCATCCTGCACCATGTAGCCCTTGCAAACAATTAGTTAAAATTTCATGCCATTGTGGTATAAGCACTTTATATCATAGATGTTCTGAATTAACATCGGCTAAAACTGAAAGACGTAATGAATTGCTCAAATGCGGGAATCAATGCCCCAAAAATTATCCTTGTGGACATCGATGTATAAATGATTGTCATCCTGGTCCATGCAAGAATGAAAAGGAATGCAACAAGAAGGTGAAGCTGTTTTGCGTGTGCAGACGTATTAAGAAAGATTTTATCTGTTCCGTGGTGCAGAACGAGGAAATCTGTATAAAATGCGATGATATTTGTGCCAAACTAATAAACGAAAAACTTCAAGCCAAAGCTGCTTTATTAGAACAAAAGCGGCAAGCTGAAGAAATACGTAATCAACAAGAAATAGAGAAATTTGAACGAAAATTTAAACCCCGTCGCAAGGGAAAGGATAAATTCGATAAAAAACAATTACAAAATGAGACATGTAATAATTATAGAAAATATTGGATTTTAGGCATTTTAATATGTACAATAGGTATAGTAATATTTTACATGACTGCACAACAATTGTGA
- Protein Sequence
- MQKFRQAQAENKIAINKHLEANAYLESSSEDEDDRNEEDIQNIVGKVISAYQGKEADAEKILSYLINIFQSGNAVCLICISTVKRADPIWNCNKCFAFLHLSCILHWIQDSLNVKGTTSIWACPKCRMEYNQDDIPRNYKCFCKKTIDPPYSPWNIPHSCGETCDKLLQPECGHKCVLLCHPGPCPPCAKTLSIKCYCGKQIPQQRRCNAKEWSCGTECNKEYKLCSHTCKEVCHSGECPPCPEILLLECHCKSNKELKQCSEGLWTCNKLCGRPLSCNVHICQSKCHLIGDCGPCPLEKNRTCPCGKKRYAISCKQEQPPTCGDTCGKLLNCGSHYCNMRCHTDRCGQCLEVVTKSCRCGSYRKEIACGKEFHCNKKCMQMRLCGRHLCNKKCCDCLIKNTYNVCEKVCDNALNCRKHKCAAPCHSGPCYPCARTDVIQCRCGYNKITVPCGTVKKIKPPSCNKPCKIPPICHHLKRETHKCHQGHCPPCKKICGMVYKRCGHSCVAVCHTKVWLKVSRNDIKTQPAGPWDIQKETYQLKTLPCPPCEVSVQVTCLGGHKTRPWPCHMAKPTSCGRLCGKTLLCTNHTCELICHKIPSSEENKNGTPCMECEKPCLLPRPQGCTHLCSEPCHPAPCSPCKQLVKISCHCGISTLYHRCSELTSAKTERRNELLKCGNQCPKNYPCGHRCINDCHPGPCKNEKECNKKVKLFCVCRRIKKDFICSVVQNEEICIKCDDICAKLINEKLQAKAALLEQKRQAEEIRNQQEIEKFERKFKPRRKGKDKFDKKQLQNETCNNYRKYWILGILICTIGIVIFYMTAQQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00217442;
- 90% Identity
- iTF_00217442;
- 80% Identity
- -