Basic Information

Insect: Bombus cullumanus
Gene Symbol: gtf3a
Assembly: GCA_014737535.1
Location: JACXIX010000015.1:2932144-2936450[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.011 16.1 0.0 2 23 725 746 724 746 0.96

2 17 6.6 6.2e+02 1.2 0.3 1 19 752 770 752 773 0.88

3 17 0.74 69 4.2 1.5 3 23 780 800 779 800 0.97

4 17 0.00022 0.02 15.4 1.2 3 23 809 830 808 830 0.98

5 17 0.009 0.84 10.3 2.9 1 23 837 860 837 860 0.95

6 17 7.8e-05 0.0073 16.7 0.7 1 23 866 889 866 889 0.94

7 17 1.1 1e+02 3.7 2.5 2 23 897 917 897 917 0.94

8 17 1.1e-07 1.1e-05 25.7 2.1 2 23 923 944 922 944 0.97

9 17 1.8e-06 0.00017 21.9 0.2 1 23 950 972 950 972 0.99

10 17 0.00046 0.043 14.3 2.4 2 23 984 1006 983 1006 0.95

11 17 0.0065 0.61 10.7 2.5 1 23 1012 1035 1012 1035 0.96

12 17 0.11 10 6.9 2.2 3 23 1057 1078 1056 1078 0.94

13 17 0.0025 0.23 12.0 0.9 2 23 1085 1107 1084 1107 0.96

14 17 0.00011 0.011 16.2 0.6 2 23 1115 1136 1114 1136 0.95

15 17 0.0011 0.1 13.2 2.5 1 23 1142 1165 1142 1165 0.96

16 17 0.27 25 5.6 3.2 2 23 1172 1193 1171 1193 0.96

17 17 0.0079 0.74 10.4 2.6 1 23 1199 1221 1199 1221 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.011	16.1	0.0	2	23	725	746	724	746	0.96
2	17	6.6	6.2e+02	1.2	0.3	1	19	752	770	752	773	0.88
3	17	0.74	69	4.2	1.5	3	23	780	800	779	800	0.97
4	17	0.00022	0.02	15.4	1.2	3	23	809	830	808	830	0.98
5	17	0.009	0.84	10.3	2.9	1	23	837	860	837	860	0.95
6	17	7.8e-05	0.0073	16.7	0.7	1	23	866	889	866	889	0.94
7	17	1.1	1e+02	3.7	2.5	2	23	897	917	897	917	0.94
8	17	1.1e-07	1.1e-05	25.7	2.1	2	23	923	944	922	944	0.97
9	17	1.8e-06	0.00017	21.9	0.2	1	23	950	972	950	972	0.99
10	17	0.00046	0.043	14.3	2.4	2	23	984	1006	983	1006	0.95
11	17	0.0065	0.61	10.7	2.5	1	23	1012	1035	1012	1035	0.96
12	17	0.11	10	6.9	2.2	3	23	1057	1078	1056	1078	0.94
13	17	0.0025	0.23	12.0	0.9	2	23	1085	1107	1084	1107	0.96
14	17	0.00011	0.011	16.2	0.6	2	23	1115	1136	1114	1136	0.95
15	17	0.0011	0.1	13.2	2.5	1	23	1142	1165	1142	1165	0.96
16	17	0.27	25	5.6	3.2	2	23	1172	1193	1171	1193	0.96
17	17	0.0079	0.74	10.4	2.6	1	23	1199	1221	1199	1221	0.98

Sequence Information

Coding Sequence: ATGCAGCACACTGAAGTTAAAAACAAGGATCATAATTATAGTGAAGTAAAATTACATAGTATTCAGCATACTGCTAGTAATATCCTAAATGTATGTGACAGTGATGTTAAAACAACATGTAAATCACACAAAACTGGATTAGTATCGAATAAAGAAATATTCGGTCAGATTAAAGATATTAATGAATTAAAAAAAATTACACCACGTGTAAAATTGTTGACTCATGATGCAAATAGTTTAAATGAGTTAACTAAAATTTCTTTGCACAATAAAGTATCTGCACAAAATAAACTATCAATATCAGAACAAACAAAACAGGAATTAAAAAAGTATTGTAGGACTTGTGCCGGTTTGAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGTCAACAAATTAAGCATTTAGAAGAAATAAATCCATATGATAGTTTATCAACTCAAATGTGTATGGATTGTATCTGTGACTTAAAAATGAGTTATAAGTTTTTTATGCAAATTAAAAAAGCAGAAGTTAAATTAAGATCTATTCACATTACTCTCACAGATACAGCGACAAAAAATGCAGAATTAAATAAAATGCAGCCTGTAGGAAGTTTCGAGAAACAGATGGAAAATGCTGTTGAGTGTAATACAAAAAATCCATCTACAAGTAAAGAATATACTTCCGTACCAAAAATATCTGCAATTTTTTCATTAAAAGATAATGAAGATATTGTAAAAGATAAGAAACTTTGTACAGATCATAAAGAATCAGAAAGTAAGGTTGAACCTGGAATTTTTGAAGACACCATTGTCTTACAAAATAGTGATGATAATGAATCAATAGAAGAATTTGATCCAGATGATCCTCCTTTTCAACCTGATAGTTCTGATGTTGCAGAGTCTGATGATGAAGTAGAAATACCAAGTGCAAGAAGACGACATATTCAACAGAAAGAAAATACAAAACAATGTTCACAATCAACTATTGTTTCTGATAATAATCCAATTTCAGATAATAAAAGTATTGAAATTAACCAAACAACGTATAATTATGAATGTATGAGAACATACATTAAAGTAGGGGACACTGAATGTAATAGTCAGTCTAATGAACCACGCAGTGTCAATAATTCTGAAAGTACAAAAGAATGTTCAAAACAACCAAACATATTAAAACGCAGGTTATTATTACAGTCCAAAAAAGAATCTACAGAAGAAACTGATGAAAATATTTACCAGACAAATATTTCTGATAAAAGTCATAAAGAATTAAAAGTACAAAAACTTGATGTAAACAATTCTTTGAACCTTAACAGTAATCAAGAAGATGGCATCATGTATGTTACTGTGAAAGGATCTAAACCGAATGAAATATTGTTAGTAAAAGTTAAGAAAATGGATAAACCATTAGAGAAAAAAGAAGATAAATCTACAGGGAAAAAGAATTTTGATATTAAACCAATGGATAAGATTTTAAAACGATATGAAACATTAGTTACAAAAGAAAAAGATTTATTTCCAGAGCGAACAAAAAAGTTAGAAATAAGAGAGCAGATTATAGAAGAACAAATAGAAGAATACAAGAAAAAGCGAGAAAAAGTATTAGGCGGACATGCCAATATTGTTGCACCTCCAAAATTTGAGGAATCTCGTTACTTTAAGCGTAATGAAAGTCAAGATAATCAAAGATCTTTTACACATATAGAAAATGATTCTGCTGTAAACATACAGTTTAATAAAGATGATAGTGAATTTAATGCAACTATTACAATTGAAGATGATGCTATAGAAATTGCAGAATCAGCCAAAGAAAAGTCTACAAATGAAAAAGCATATGTAAATACTGAAGAATATTTATCACATTTAGCAAAGCTTAAATTGAAATGGGAAGAAGCAAAAAAGAAGAAAGAATATCTTCAAAAAGAACTTGATGAATCTTATACAGAAGGAAATATTGAAAAGTTAGCAAGAATTTTAGGGGAAAAAAAAAAAAATTTGCAAGATTTTCAAGATTATTTAAAACAACGTAAAATTGTAATTACAAGATTAAAAGATGAGGATATTATTTCTCTTTATGAAGACAGAAATAATGCAGTCCTTAAAAACAACTTACCTGACTTAATAGATGAAAGTCAACCAGCAGATTATATTCCAGAAGAACATTATTTAGAATGTGATTATTGTCCAGAAACATTTGCTTCTAAAGAAGTTCTTGAAGAACATTTGAGATTACATGACTATAAAATTATGCATTTTTGTGAAGATTGCATGGAAGAATTCCCAACAAATAAAGCAAAACGAAATCATAATATGATTTGTATAAAAAAATTACTATGTAAATATTGTGACATGATGTTAGATTCAAAAGGAAAAAAGCGTCAGCATGAACAAAAACATTGTGATAGTATGTATGGACAATTATGTGATGTATGTGGTGAAAAGTTTAAACATCAAGGAACATTGGATCAACATGTCAAAACACAACACATGAATTGGGAGAAAATATATCAATGTACAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTTAGCTTTCATTTGAAATCTGTACACACAACTTTAAGAGCCTATTTGTGTGAGGACTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTTAGACATCATAGAATACGTAAACATCAACCTGTAAGTAATAAGAGAGAATGCCCAGTTTGCCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGTCCACACTGTGACAAAATGTTTAAAAATAGTTCAACTTTAAAGCAACATGTAAGAATTCATGAAGATCAACGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGAAGAGATGGTTTAAGGTTACACATGAGAGTACATGAGAAGACCGATAGTAGAGGATTAAAAGAATGTTCATGTCAAGTATGTGGTGAAAAGTTTCCAAATCATTCAACACTTGTTATACATAGGAATCGAGTTCATAAGGATGGTAGACAATACACTTGCCATATATGTAATAGGTCAATGATTTCAACTAGATCATTAGAGTGGCATATGTCTCATATACACAATGAAACACTTCCTGGTGTAAAGGAAGGGATAGATGGGGCACCAGAAAAAAGAAGAGCATCATGTTATCGTTGTAGTAAGACATTCAAAACAGAAATGATTTTGAGAACGCATATTAAAAACACACATATGGAGAAAGATCCTATGAAATGTTTAGATTGTGAATTAACATTTATTTCCGAAGTGAGGTTAAGACATCATATGATGGTCACACATAACAGATTAGAAGGAACTATACCGTGCCCGCATTGTCCAAAGAGATTTGTGAATCAAATCAGATTAAAAACTCATTTGGTATCTCATTCTGAAGATAGACCACACACTTGTGAAATCTGTGGGTTTAAATTGAAAACTAAGATACAGTTGGTTAAACATCAACAAAATAGGCACAGTGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCACTTGTATGTCATGAAAGAACTCATACAAATGAACGACCATATTCTTGCAGTGTATGTAGGCAACGTTTTAAATATTTAGGTGATAAAAATAAACATGAAAGACGACATGAAAGCTTAGGAGGATCTGGATTTAAAAGGATAATACTTAGTCGAAATAGTAAACCTAAACTATTAGAAGATTCTTCTTGTTCTGAACAGGAAAGTTTAAATAATATAAAGTGTCAAGTTCCTGAAAGTGAATATCAAGAACAGACAGATCAACAATTTGAAGAAGAACAAATAATTAAATTTGAAGAGCAAGAAATAACAGAAGAATATGAACAAGTATATGAACAGGAATATGAAGAGACATCCAGAGAAGCTTCTGATGCAGCAGAAGTTATAATGAATATGGAAGACACAACAGTTTACACAGAAGAAGTAACTGCAGATAACATTGAACCTACAGAAATTATGGCAGATGAAATAATGACAAATGAAATATTACAATCAGGTGCTGTAGTTCATTTGCAACAAGCAGATGATTCAGGAAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTATCCGATGCAAATACAGAGGTCAATTTAGCTACTGCATCCATTATGTATAATAATTGA
Protein Sequence: MQHTEVKNKDHNYSEVKLHSIQHTASNILNVCDSDVKTTCKSHKTGLVSNKEIFGQIKDINELKKITPRVKLLTHDANSLNELTKISLHNKVSAQNKLSISEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIKHLEEINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLRSIHITLTDTATKNAELNKMQPVGSFEKQMENAVECNTKNPSTSKEYTSVPKISAIFSLKDNEDIVKDKKLCTDHKESESKVEPGIFEDTIVLQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPSARRRHIQQKENTKQCSQSTIVSDNNPISDNKSIEINQTTYNYECMRTYIKVGDTECNSQSNEPRSVNNSESTKECSKQPNILKRRLLLQSKKESTEETDENIYQTNISDKSHKELKVQKLDVNNSLNLNSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKEDKSTGKKNFDIKPMDKILKRYETLVTKEKDLFPERTKKLEIREQIIEEQIEEYKKKREKVLGGHANIVAPPKFEESRYFKRNESQDNQRSFTHIENDSAVNIQFNKDDSEFNATITIEDDAIEIAESAKEKSTNEKAYVNTEEYLSHLAKLKLKWEEAKKKKEYLQKELDESYTEGNIEKLARILGEKKKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPADYIPEEHYLECDYCPETFASKEVLEEHLRLHDYKIMHFCEDCMEEFPTNKAKRNHNMICIKKLLCKYCDMMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMNWEKIYQCTKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVSNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNETLPGVKEGIDGAPEKRRASCYRCSKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFISEVRLRHHMMVTHNRLEGTIPCPHCPKRFVNQIRLKTHLVSHSEDRPHTCEICGFKLKTKIQLVKHQQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIILSRNSKPKLLEDSSCSEQESLNNIKCQVPESEYQEQTDQQFEEEQIIKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPTEIMADEIMTNEILQSGAVVHLQQADDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_00220747;
80% Identity: -