Basic Information

Insect: Bombus consobrinus
Gene Symbol: gtf3a
Assembly: GCA_014737455.1
Location: JACXIU010000059.1:1124080-1129833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.6e-07 4.5e-05 23.5 0.3 2 23 728 749 727 749 0.97

2 17 7.4 5.9e+02 1.1 1.4 1 19 755 773 755 774 0.91

3 17 0.93 74 4.0 3.1 1 23 781 803 781 803 0.97

4 17 0.00023 0.018 15.3 1.2 3 23 812 833 811 833 0.98

5 17 0.0023 0.19 12.1 2.0 1 23 840 863 840 863 0.95

6 17 8.3e-05 0.0066 16.7 0.7 1 23 869 892 869 892 0.94

7 17 1.1 91 3.7 2.5 2 23 900 920 900 920 0.94

8 17 1.2e-07 9.7e-06 25.6 2.1 2 23 926 947 925 947 0.97

9 17 1.9e-06 0.00016 21.8 0.2 1 23 953 975 953 975 0.99

10 17 0.00049 0.039 14.3 2.4 2 23 987 1009 986 1009 0.95

11 17 0.0069 0.55 10.7 2.5 1 23 1015 1038 1015 1038 0.96

12 17 0.022 1.8 9.1 3.8 3 23 1060 1081 1059 1081 0.95

13 17 0.001 0.081 13.3 1.4 2 23 1088 1110 1087 1110 0.96

14 17 0.0001 0.0083 16.4 1.6 2 23 1118 1139 1117 1139 0.96

15 17 0.0011 0.084 13.2 2.3 1 23 1145 1168 1145 1168 0.96

16 17 0.28 23 5.6 3.2 2 23 1175 1196 1174 1196 0.96

17 17 0.0083 0.67 10.4 2.6 1 23 1202 1224 1202 1224 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.6e-07	4.5e-05	23.5	0.3	2	23	728	749	727	749	0.97
2	17	7.4	5.9e+02	1.1	1.4	1	19	755	773	755	774	0.91
3	17	0.93	74	4.0	3.1	1	23	781	803	781	803	0.97
4	17	0.00023	0.018	15.3	1.2	3	23	812	833	811	833	0.98
5	17	0.0023	0.19	12.1	2.0	1	23	840	863	840	863	0.95
6	17	8.3e-05	0.0066	16.7	0.7	1	23	869	892	869	892	0.94
7	17	1.1	91	3.7	2.5	2	23	900	920	900	920	0.94
8	17	1.2e-07	9.7e-06	25.6	2.1	2	23	926	947	925	947	0.97
9	17	1.9e-06	0.00016	21.8	0.2	1	23	953	975	953	975	0.99
10	17	0.00049	0.039	14.3	2.4	2	23	987	1009	986	1009	0.95
11	17	0.0069	0.55	10.7	2.5	1	23	1015	1038	1015	1038	0.96
12	17	0.022	1.8	9.1	3.8	3	23	1060	1081	1059	1081	0.95
13	17	0.001	0.081	13.3	1.4	2	23	1088	1110	1087	1110	0.96
14	17	0.0001	0.0083	16.4	1.6	2	23	1118	1139	1117	1139	0.96
15	17	0.0011	0.084	13.2	2.3	1	23	1145	1168	1145	1168	0.96
16	17	0.28	23	5.6	3.2	2	23	1175	1196	1174	1196	0.96
17	17	0.0083	0.67	10.4	2.6	1	23	1202	1224	1202	1224	0.98

Sequence Information

Coding Sequence: ATGAATAGGTCAAAGATGCAGCACACTGAAGTTAAAAACAAGGATCATAATTATAGTGAAGTAAAATTACATAGTATTCAGCATACTGCTAGTAATATCCTTAATGTATGTGATAGTGATGTTAAAACAACATGTAAATCAAACAAAACTGGATTAGTATCGAATAAAGAAATATTCGGTCAGATTAAAGATATTAGTGAATTAAAAAAAATTACACCACGTGTAAAATTGTTGACTCATGATGCAAATAGTTTAAATGAATTAACTAAAATTTCTTTGCACAATAAAGTATCTGCGCAAAAGAAACTATCAATATCAGAACAAACAAAACAGGAATTAAAAAAGTATTGTAGGACTTGTGCCGGTTTGAAACTTCCATTAGTTGATATTTTTAGTGAAAAAGGTAATCAAATGAGATTAAGTCAACAAATTAAGCATTTAGAAGAAATAAATCCATACGATAGTTTATCAACTCAAATGTGTATGGATTGTATCTGTGACTTAAAAATGAGTTATAAGTTTTTTATGCAAATTAAAAAAGCAGAAGTTAAATTAAGATCTATTCACATTACTCTCACAGATACAGCGACAAAAAATGCAGAATTAAATAAAATGCAGCCTGTAGGAAGTTTCGAGAAACAGATGGAAAATGCTGTTGAGTATAATACAAAAAATCCATCTACAAGTAAAGAATATACTTCTGTACCAAAAATATCTGCAATTTTTTCATTAAAAGATAATGAAGATATTGTAAAAGATAAGAAACTTTGTACAGATCATAAAGAATCAGAAAGTAAAGTTGAACCTGGAATTTTTGAAGACACCACTGTCTTACAAAATAGTGATGATAATGAATCAATAGAAGAATTTGATCCAGATGATCCTCCTTTTCAACCTGATAGTTCTGATGTTGCAGAGTCTGATGATGAAGTAGAAATACCAAGTGCAAAAAGACGACATATTCAACAGAAAGAAAATACAAAACAATGTTCACAATCAACTATTGTTCCTGATAATAATCCAATTTCAGATAATAAAAGTACTGAAATTAACCAAACAACATATAATTATGAATGTATGAGAACATACATTAAAGTAGGAGACACAGAATGTAATAATACTGAACCACGCAGCATCAATAATTCTGAAAGTACAAAAGAATGTTCAAAACAACCAAACATATTAAAACGCAGGTTATTATTACAATCTAAAAAAGAATCTACAGAAGAAACTGATGAAAATATTTACCAGACAAATATTTCTGATAAAAGCCATAAAGACTTAAAAGTACAAAAACTCGATGTAAACAATTCTTTGAACCTTAACAGTAATCAAGAAGATGGCATCATGTATGTTACTGTGAAAGGATCTAAACCGAATGAAATATTGTTAGTAAAAGTTAAGAAAATGGATAAACCATTAGAGAAAAAAGAAGATAAATCTACAGGGAAAAAGAATTTTGACATTAAACCAATGGATAAGATTTTAAAACGATATGAAACATTAGTTACAAAAGAAAAAGATTTATTTCCAGAACGAACAAAAAAGTTAGAAATAAGAGAGCAGATTATAGAAGAACAAATAGAAGAATACAAAAAAAAGCGAGAAAAAGTATTAGGTGGACATGCCAATATTGTTGCACCTCCAAAATTTGAGGAATCTCGTTACTTTAAGCGTAATGAAAGTCAAGATAATCAAAGATCTTTTACACATATAGAAAATGATTCTGCTGTAAACATACAGTTTAATAAAGATGATAGTGAATTTAATGCAACTATTACAATTGAAGATGATGCTATAGAAATTGCAGAATCAGCCAAAGAAAAGTCTACAAATGAAAAAGCATATGTAAATACTGAAGAATATTTATCACGTTTAGCAAAGCTTAAATTGAAATGGGAAGAAGCAAAAAAGAAGAAAGAATATCTTCAAAAAGAACTTGATGAATCTTATACAGAAGGAAATATTGAAAAGTTAGCAAGAATTTTAGGGGAAAAAAAAAAAAATTTGCAAGACTTTCAAGATTATTTAAAACAACGTAAAATTGTAATTACAAGATTAAAAGATGAGGATATTATTTCTCTTTATGAAGACAGAAATAATGCAGTCCTTAAAAACAACTTACCTGACTTAATAGATGAAAGTCAACCAGCAGATTATATTCCAGAAGAACATTATTTAGAATGTGACTATTGTCCAAAAACATTTGCTTCTAAAGAAACTCTTGAAGAACATTTAAGAACACATGACTATAAAATTATGCATTTTTGTGAAGATTGCATGCAAGAATTTTCAACAAATAAAGCAAAACGAAATCATAATGTGAATTGTATAGAAAAATTCAAGTGTAAACAGTGTAACATGTTGTTAAGTTCAAAAGGAAAAAAACGTCAGCATGAACAGAAACATAGTGATGATAATTATGGACAATTATGCGATGTATGTGGTGAAAAGTTTAAACATCAAGGAACATTGGATCAACATGTCAAAACACAACACATGAATTGGGAGAAAATATATCAATGTCCAAAGTGTCCTAAAAAGTTTGCATTCAAACAAAAACTTAGCTTTCATTTGAAATCTGTACACACAACTTTAAGAGCCTATTTGTGTGAGGACTGTGGAGCTGATTTTAAAAATCCTGCAAGTCTTAGACATCATAGAATACGTAAACATCAACCTGTAAGTAATAAAAGAGAATGCCCAGTTTGCCATAAATTAGTACCATTTTATAGCCTTTCTAAACACATGCATACTCATAAAGCATATACTATTCAGTGTCCACACTGTGACAAAATGTTTAAAAATAGTTCAACTTTAAAGCAACATGTAAGAATTCATGAAGATCAACGTCAATATCGATGTGATACTTGTGGTGTTGGATTTAATAGAAGAGATGGTTTAAGGTTACACATGAGAGTACATGAGAAGACCGATAGTAGAGGATTAAAAGAATGTTCATGTCAAGTATGTGGTGAAAAGTTCCCAAATCATTCAACACTTGTTATACATAGGAACCGAGTTCATAAGGATGGTAGACAATACACTTGTCATATATGTAATAGATCAATGATTTCAACTAGATCATTAGAGTGGCATATGTCTCATATACACAATGAAACGCTTCCTGGTGTAAAGGAAGGGATAGATGGGGCACCAGAAAAAAGAAGGGCATCATGTTATCATTGTAATAAGACATTCAAAACAGAAATGATTTTGAGAACGCATATTAAAAACACACATATGGAGAAAGATCCTATGAAATGTTTAGATTGTGAATTAACATTTACTTCCGAAGTGAGGTTAAGACATCATATGATGGTCACACATAACAGATTAGAAGGAACTTTACCATGCCCACATTGTTCAAAGAGATTTGTGAATCAACTCAGATTAAAAACTCATATGATATCTCATTCTGAAGAAAGGCCATACACTTGTGAAATCTGTGGGTTTAATTTGAAAACTAAGATACAGTTGATTAAACATCATCAAAATAGGCACAGCGATGAAAGACCTTTACAGTGTAGATATTGTCCTTGGAGATGTAAACAAGTTAGTGCACTTGTATGTCATGAAAGAACTCATACAAATGAACGACCATATTCTTGCAGTGTATGTAGGCAACGTTTTAAATATTTAGGTGATAAAAATAAACATGAAAGACGACATGAAAGCTTAGGAGGATCTGGATTTAAAAGGATAATACTTAGTCGAAATAGTAAACCTAAACCATTAGAAGATTCTTCTTGTTCTGAACACGAAAGTTTAAATAATATAAAGTGTCAAGTTCCTGAAAGTGAATATCAAGAACAGACAGATCAACAATTTGAAGAAGAACAAATAGTTAAGTTTGAAGAAGAACAAATAGTTAAGTTTGAAGAAGAACAAATAGTTAAATTTGAAGAAGAACAGATTAAATTTGAAGAACAAGAAATAACAGAAGAATATGAACAAGTATATGAACAGGAATATGAAGAGACATCCAGAGAAGCTTCTGATGCAGCAGAAGTTATAATGAATATGGAAGATACAACAGTTTACACAGAAGAAGTAACTGCAGATAACATTGAACCTACAGAAATTATGGCAGATGAAATAATGACAAATGAAATATTACAATCAGGTGCTGTAGTTCACTTGCAACAAGAAGATGATTCAGGGAAAATACAAGTGATTCCAGTGATGTTATCTTTACCTGATTTATCCGATGCAAATACAGAGGTCAATTTAGCTACTGCATCCATTATGTATAATAATTAA
Protein Sequence: MNRSKMQHTEVKNKDHNYSEVKLHSIQHTASNILNVCDSDVKTTCKSNKTGLVSNKEIFGQIKDISELKKITPRVKLLTHDANSLNELTKISLHNKVSAQKKLSISEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLSQQIKHLEEINPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLRSIHITLTDTATKNAELNKMQPVGSFEKQMENAVEYNTKNPSTSKEYTSVPKISAIFSLKDNEDIVKDKKLCTDHKESESKVEPGIFEDTTVLQNSDDNESIEEFDPDDPPFQPDSSDVAESDDEVEIPSAKRRHIQQKENTKQCSQSTIVPDNNPISDNKSTEINQTTYNYECMRTYIKVGDTECNNTEPRSINNSESTKECSKQPNILKRRLLLQSKKESTEETDENIYQTNISDKSHKDLKVQKLDVNNSLNLNSNQEDGIMYVTVKGSKPNEILLVKVKKMDKPLEKKEDKSTGKKNFDIKPMDKILKRYETLVTKEKDLFPERTKKLEIREQIIEEQIEEYKKKREKVLGGHANIVAPPKFEESRYFKRNESQDNQRSFTHIENDSAVNIQFNKDDSEFNATITIEDDAIEIAESAKEKSTNEKAYVNTEEYLSRLAKLKLKWEEAKKKKEYLQKELDESYTEGNIEKLARILGEKKKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNNLPDLIDESQPADYIPEEHYLECDYCPKTFASKETLEEHLRTHDYKIMHFCEDCMQEFSTNKAKRNHNVNCIEKFKCKQCNMLLSSKGKKRQHEQKHSDDNYGQLCDVCGEKFKHQGTLDQHVKTQHMNWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVSNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNETLPGVKEGIDGAPEKRRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCSKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIILSRNSKPKPLEDSSCSEHESLNNIKCQVPESEYQEQTDQQFEEEQIVKFEEEQIVKFEEEQIVKFEEEQIKFEEQEITEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNIEPTEIMADEIMTNEILQSGAVVHLQQEDDSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00684931;
90% Identity: iTF_00220747;
80% Identity: -