Bcos010558.1
Basic Information
- Insect
- Bombus consobrinus
- Gene Symbol
- -
- Assembly
- GCA_014737455.1
- Location
- JACXIU010000030.1:841552-845892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0097 0.78 10.2 0.0 1 20 60 79 60 81 0.95 2 19 0.045 3.6 8.1 2.3 1 21 98 118 98 119 0.96 3 19 0.00011 0.0089 16.3 3.0 2 23 154 175 153 175 0.94 4 19 0.00016 0.013 15.8 2.2 1 23 179 201 179 201 0.97 5 19 0.00015 0.012 15.9 0.6 3 23 209 229 208 229 0.97 6 19 2.6e-05 0.0021 18.3 3.6 2 23 236 257 235 257 0.96 7 19 0.52 41 4.8 3.0 1 20 266 285 266 289 0.79 8 19 0.14 12 6.5 0.2 3 23 296 315 295 315 0.95 9 19 0.51 41 4.8 2.5 3 13 323 333 322 335 0.89 10 19 0.037 3 8.4 2.4 1 23 428 450 428 450 0.97 11 19 3.5e-06 0.00028 21.0 1.1 3 23 461 482 460 482 0.96 12 19 0.00012 0.0099 16.2 4.9 1 23 488 510 488 510 0.98 13 19 0.031 2.5 8.6 0.4 1 23 514 536 514 536 0.97 14 19 3.8e-06 0.00031 20.9 1.5 3 23 544 564 542 564 0.97 15 19 1.1e-05 0.00089 19.5 0.2 1 23 570 592 570 592 0.98 16 19 0.068 5.5 7.5 0.9 1 23 598 620 598 620 0.97 17 19 3.3e-07 2.7e-05 24.3 0.1 2 23 627 648 626 648 0.97 18 19 5.9e-07 4.7e-05 23.5 0.6 1 23 654 676 654 676 0.98 19 19 1e-07 8.4e-06 25.8 1.9 1 23 682 704 682 704 0.99
Sequence Information
- Coding Sequence
- ATGCTTTTCATGGCTGTGTGCATTTTGTGCAACGTATCCACGATACAATTACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCACCGCTAAATCATCCAACGAGGAAGCTCGATCGTTTGTGAACAAAATGATCGATAACTCTCACGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTCGACACGGAAGCTGCTCTGTTGGTACACAGAACCGAGCAATCGATCCTTCGAACTCGGGAAGCATTGAAAAAAGCTGAAAAGAAATACACGTGTGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTACAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAGCAGCACAAAGCGAAGGACAAAACGATAAAAACGAAACGGAAGGAACCGAATGTTTCTACTGACCCGATCGAGTGCAACGTGTGTCATAAAGTTTTTAAGAAGAAGAAATATCTAAATGTTCATAAAACGTTGCATGGAGCGCCTCATATCTGTCACGTATGCGGTGCCAAATTGACTTCTGAATATTATTTGAAGATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCGAGGTGTGTAACAAGGGATTTTACTTGAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAATGATAAACCGTGCATTTGCGAGGTTTGTCACAAGTCTTTCGGCAATAGAGTTTATTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAGAATAGGAGGAAGTACAGATGCGAAATCTGTGGGTTCGAGACTTTCTACAGTTACTGTTATAAGGAACATGTGTGGACGCATACGGGAGAAAGTCAGGTGGCTTGTGAGGTTTGCGGTAAATTGATCAGGAGACAGTATATGAAGATTCATATTAGAATACACACTGGCGAGAAGCCCGAGATCTGTGAATTTTGCGGCAAAGCGTTTAGTTCGAGGAAGTGTCAGGCGGTCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTCAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGACACGTTAGAAGAAAGTAACGACACGGAGATGAAACTGATTCTGGAAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGAAACAGAGAACGTTAACATAGATTATAACAATAAATACGAGAGCAGAAAATGCTCGGTCATTTATGAATGCGACGTCTGTAACAAAAAAATGCGTAAGAAGCTTCAATTTCTAAAACATAGGCAGGACCATGAAAGGAATTACGAAGAAACTGGTGGTCATTGCGAGGAATGTGATAAAAGTTTCGCGGATGAAGAGAAATTGAAGAAACACATGATCAAAGTGCACCAAAAGGAGAAACCTTTTCAATGTGTTCTCTGTAATAAATGCTTCAAAACGGAAGAATTCTTAAAGACACACCTGAAGCAACACAACAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCGTTTACATAAAAAGAAACATAACGAGGAATATGTGACGCACTGTGAAATCTGCGGCAAAGGTTTCTACACGAACCAAACCCTGGAAAGACACTTACTCACACATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGCAACACCCCTTACGCGAGTGCTGCGTATCTGAATACGCACATGAAGTCTCACGGCGAACGAGAGAAACACAAGTGCAATATTTGTAATTTCGAAAGTTACTGGAAGGCGGCTCTAAAGGTACACCTTAAGATACACACTGGAGAGAACCTGATCACCTGTGAGATATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATCCATATGCGTATACATTCTGGCGAGAAACCACACGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTCGAAAATATCTGATTGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAGGTATGTCAGAAAAGGTTCACGCAGCAGGGTTCACTGAATTCGCATATGAAGTCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MLFMAVCILCNVSTIQLPKSVKTIPAKRNQSRTAKSSNEEARSFVNKMIDNSHVVQEASYRCESCDEEFDTEAALLVHRTEQSILRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKEPNVSTDPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSNDKPCICEVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHVWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQAVSMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDTLEESNDTEMKLILEEEEEEEEEQEEETENVNIDYNNKYESRKCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEETGGHCEECDKSFADEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -