Basic Information

Insect: Bombus consobrinus
Gene Symbol: -
Assembly: GCA_014737455.1
Location: JACXIU010000030.1:793249-796371[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.8e-06 0.00023 21.3 0.3 1 23 18 40 18 40 0.97

2 18 1.7e-05 0.0014 18.9 1.4 1 23 46 68 46 68 0.97

3 18 0.00018 0.015 15.6 0.5 1 23 74 96 74 96 0.98

4 18 2.1e-06 0.00017 21.7 7.0 1 23 102 124 102 125 0.96

5 18 0.0016 0.13 12.7 2.1 1 23 141 164 141 164 0.96

6 18 0.0086 0.69 10.4 0.6 3 23 174 194 172 194 0.95

7 18 5.8e-07 4.6e-05 23.5 0.4 2 23 201 222 200 222 0.98

8 18 0.00033 0.026 14.8 0.7 3 20 230 247 228 249 0.94

9 18 0.089 7.1 7.2 0.7 2 23 284 306 283 306 0.96

10 18 7.3e-06 0.00058 20.0 0.8 1 23 312 335 312 335 0.97

11 18 0.055 4.4 7.8 0.5 2 23 341 362 340 363 0.94

12 18 2.3e-05 0.0018 18.5 0.5 1 23 368 390 368 390 0.98

13 18 0.00017 0.014 15.7 0.5 2 23 397 419 396 419 0.94

14 18 5.4e-05 0.0044 17.3 2.1 1 23 441 464 441 464 0.93

15 18 0.0018 0.14 12.5 0.1 1 23 475 497 475 497 0.95

16 18 0.0068 0.55 10.7 3.6 1 23 503 525 503 525 0.94

17 18 4.2e-07 3.4e-05 23.9 1.1 1 23 531 553 531 553 0.98

18 18 1.5e-05 0.0012 19.1 0.1 1 21 559 579 559 580 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.8e-06	0.00023	21.3	0.3	1	23	18	40	18	40	0.97
2	18	1.7e-05	0.0014	18.9	1.4	1	23	46	68	46	68	0.97
3	18	0.00018	0.015	15.6	0.5	1	23	74	96	74	96	0.98
4	18	2.1e-06	0.00017	21.7	7.0	1	23	102	124	102	125	0.96
5	18	0.0016	0.13	12.7	2.1	1	23	141	164	141	164	0.96
6	18	0.0086	0.69	10.4	0.6	3	23	174	194	172	194	0.95
7	18	5.8e-07	4.6e-05	23.5	0.4	2	23	201	222	200	222	0.98
8	18	0.00033	0.026	14.8	0.7	3	20	230	247	228	249	0.94
9	18	0.089	7.1	7.2	0.7	2	23	284	306	283	306	0.96
10	18	7.3e-06	0.00058	20.0	0.8	1	23	312	335	312	335	0.97
11	18	0.055	4.4	7.8	0.5	2	23	341	362	340	363	0.94
12	18	2.3e-05	0.0018	18.5	0.5	1	23	368	390	368	390	0.98
13	18	0.00017	0.014	15.7	0.5	2	23	397	419	396	419	0.94
14	18	5.4e-05	0.0044	17.3	2.1	1	23	441	464	441	464	0.93
15	18	0.0018	0.14	12.5	0.1	1	23	475	497	475	497	0.95
16	18	0.0068	0.55	10.7	3.6	1	23	503	525	503	525	0.94
17	18	4.2e-07	3.4e-05	23.9	1.1	1	23	531	553	531	553	0.98
18	18	1.5e-05	0.0012	19.1	0.1	1	21	559	579	559	580	0.96

Sequence Information

Coding Sequence: ATGAGAAAGCTGGTAGAACACCTGAAGAACCTCCATGGTATCGACAGAGCCTTCAGCTGCGACGAGTGCGGCAAAACTTTCAGAAGTCCCATGAACATAGCTCGTCACAAATTAATTCACACTGGTTTCAAAAAATTCGCCTGCGACTTATGCGACTATAGATCAAACCAAAAGTCAAACCTCGAGAGCCATCGTCGAAGACACACCAAAGACTATTCCTTTAAATGCGAACAATGTGGAAAAGGCTTCTTCCTGAGAACAGAATACTTGGAACATATAAATGTTCATACTAGGAAGCTATTGTACAAATGTGATCACTGTAGCAAGTCATACCCTTACAAGAAGAACCTGACAAATCACTTAAGAACGCATCATGCGAGTGTCTCGCAGTTAGAATTAAGAAATGACGTGACAAAGAAGCACGTGTGCACAATTTGCCTGGAGGGTTTCACGCGAAAATTGTTCTTGGAAAGGCACTTGAAGCAACGACACGGTTTGTACGAGAAAATGAAGCATTTATGCGATCTGTGCGGCGCAGTGTTGTCTTCCAAGAGGAGGTTGATGGTGCATAGGCGGGGCCACGTTAACGAGAAGATCGTAAAATGCGATTTATGCGACAAGCAGTTCTCTAGCAAAGAAAACCTCGCTGTTCATCGGCGAGTGCACACTGGGGAGAAACCGTACGGTTGCTCGCAGTGTGGAAGAAGGTTTACACAGAGGACTTCTTTGATATTACATCTTAGCCACTGGGGCAACGATCACGACGTGCTTAGCAGCTGCGAAGATTTCAGAATCAAGAACGAGGATATTCTTCTCGATCCTGGACAAAAGTTCGAGGGGAACGAGAAAGTCTGCGACCTTTGTCAAGAAAAATTCCACTTCGTAACCAGATTAGTAGCTCATCTGAGGATCGTCCACGGTATCCATAGACCCTTCAAATGTGCCACATGTGGGAAGACATATCCGCAGCAGTTCATGCTAAACGCCCATGTGAAAAAATCTCACACTCCTAAAACGATCCCCTGCACTGAATGCAGTTTCATGGGGGTGAATGCCACTGACGTGGAAAGACATACGAAACGACACCATCGAGAAATGAAGTTCACCTGTGAAATCTGTAGCGAGAACTTCGTAGACAAGGATTCCTTGATGACTCACACAACTATGCATAACTTTATGCAATTTCAACAATGTAACGCTTGTGGTACTACGTTCAACGACGCGTACAGCCTAAAGGAGCACAACCGTTTGTACCACTACGATCCAACAACGTTGATTCAAGAGAAGCTGGAAGCTGACAGTCCGCAGAACACCACGGAGCACAAATGCGACGTCTGTGGGAAGGTTTACAAGTACAAATCGGTCTTGAAGCAACACAAAGTGAAAGCTCACGGTGATATGCCAAATTACGAGAGACGTCGATATTTATGCGCTCTTTGCGGGAAAGAATTAAAAACCGCGAAAGGCCTCGAAATTCACAATCGATCGCACACCGGCGAAAAGCCTTACACCTGCGAGGTGTGTGGCAAGTGTTTCGCTTGTGAAACACTGCTCAGGACTCATAATGTCACGCACACTGGCGAGAGAAAGTATTCTTGCGACCAGTGTGGCAAAGCTTTCACGCAGAGATCCACGTTGGTCGTGCATAAACGTTATCATACCGGCGAACGACCGTATGTTTGTCCTCGATGTGGAAAAGGTTTCGTCACCAGGACTGTCCTGAACACTCACATGAAGTCCTGCCGTTGA
Protein Sequence: MRKLVEHLKNLHGIDRAFSCDECGKTFRSPMNIARHKLIHTGFKKFACDLCDYRSNQKSNLESHRRRHTKDYSFKCEQCGKGFFLRTEYLEHINVHTRKLLYKCDHCSKSYPYKKNLTNHLRTHHASVSQLELRNDVTKKHVCTICLEGFTRKLFLERHLKQRHGLYEKMKHLCDLCGAVLSSKRRLMVHRRGHVNEKIVKCDLCDKQFSSKENLAVHRRVHTGEKPYGCSQCGRRFTQRTSLILHLSHWGNDHDVLSSCEDFRIKNEDILLDPGQKFEGNEKVCDLCQEKFHFVTRLVAHLRIVHGIHRPFKCATCGKTYPQQFMLNAHVKKSHTPKTIPCTECSFMGVNATDVERHTKRHHREMKFTCEICSENFVDKDSLMTHTTMHNFMQFQQCNACGTTFNDAYSLKEHNRLYHYDPTTLIQEKLEADSPQNTTEHKCDVCGKVYKYKSVLKQHKVKAHGDMPNYERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00361060;
90% Identity: iTF_00684909;
80% Identity: iTF_00220722;