Basic Information

Insect: Bombus confusus
Gene Symbol: Snai1
Assembly: GCA_014737475.1
Location: JACXIV010000112.1:237977-242630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8 6.1e+02 1.0 0.1 3 15 65 77 63 80 0.73

2 13 0.088 6.8 7.2 0.1 1 23 236 258 236 258 0.93

3 13 1.2e-05 0.00095 19.3 1.2 1 23 266 288 266 288 0.98

4 13 5e-06 0.00038 20.5 0.2 2 23 296 317 295 317 0.97

5 13 5.9e-06 0.00046 20.3 1.1 1 23 323 345 323 345 0.98

6 13 1.9e-05 0.0015 18.7 2.0 1 23 352 374 352 374 0.99

7 13 3.6e-06 0.00028 21.0 0.6 1 23 380 402 380 402 0.96

8 13 1.2e-05 0.00093 19.3 0.2 1 23 408 430 408 430 0.98

9 13 5.2e-07 4e-05 23.6 1.2 1 23 436 459 436 459 0.96

10 13 2.7e-06 0.00021 21.4 0.5 1 23 465 488 465 488 0.96

11 13 6e-06 0.00046 20.3 3.5 1 23 494 516 494 516 0.99

12 13 6.7e-05 0.0052 17.0 0.4 1 23 522 544 522 544 0.94

13 13 0.00021 0.016 15.4 0.1 1 23 550 574 550 574 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8	6.1e+02	1.0	0.1	3	15	65	77	63	80	0.73
2	13	0.088	6.8	7.2	0.1	1	23	236	258	236	258	0.93
3	13	1.2e-05	0.00095	19.3	1.2	1	23	266	288	266	288	0.98
4	13	5e-06	0.00038	20.5	0.2	2	23	296	317	295	317	0.97
5	13	5.9e-06	0.00046	20.3	1.1	1	23	323	345	323	345	0.98
6	13	1.9e-05	0.0015	18.7	2.0	1	23	352	374	352	374	0.99
7	13	3.6e-06	0.00028	21.0	0.6	1	23	380	402	380	402	0.96
8	13	1.2e-05	0.00093	19.3	0.2	1	23	408	430	408	430	0.98
9	13	5.2e-07	4e-05	23.6	1.2	1	23	436	459	436	459	0.96
10	13	2.7e-06	0.00021	21.4	0.5	1	23	465	488	465	488	0.96
11	13	6e-06	0.00046	20.3	3.5	1	23	494	516	494	516	0.99
12	13	6.7e-05	0.0052	17.0	0.4	1	23	522	544	522	544	0.94
13	13	0.00021	0.016	15.4	0.1	1	23	550	574	550	574	0.94

Sequence Information

Coding Sequence: ATGACAGCTGATTCAGAAAAAGATAGTACTCATTGTTTGATATGTAACAGTAAAGTTGGTGTATCTACTAGGAATAATATAGAAATCTTTAATGAAAACTCTGTAACATCGTCAGAAAAACCACTTGTAGATGCCATTTGTACTGTCTTAGAAACAGATTTAAATAAAGAGAATGTACATTCTCTTGTCATATGTAAGAAATGCTATAAATTATTTAATGAGATTGACGAACTTGAAAGTCGACTGACAGAGGTAAAATTAGAATTATTTAATAACTATAAGAAAACTATTAAAAAGATATCTGATATTAAGAATGAAGAAGAATATAATGATCATGATTACATAGAAAATACAGAAAGTCAGGATACAGATGGAGAAATTAGATATATAAAAAAGGATGAATCAGAAATTCAAGAGATGGAAGGGGAAGAAGAAAGAATAGAGGAAGAAGAAGAGGAACCTTCTTGTGAACCAGAGGAAATTATTCTGAAAGTTGACGCCATACCAGAAACAAGCAATACTGAAGAAAGAAAAAGGATAAAACGAACAAAAGCTACATCAAACGTTGAACCTCCTCAAGAGCAAATTGTTGCTAGAGATGGCTCTCTATATACCTGTTTGTTATGTACAAATAAAGATGATAAAGTTGTAGGAGATGCAAAATCTATTATCGCGCATGTAAGGGGCGTGCACGAAACTCGTTTATATATTTGTGATATATGCGGGGATGACTTTAGAAAGAGAAATGTATTATCTATTCATCTTGATGATCATGTTGCTAAAGAGGAAGGAGATTTTCAGTGTGAAATATGTAATAGAATATTTAGTAATTTGCGATTGTTTAGAATTCATAAAAGAATACATTATCCACAAGTGAAATCTTGGCCGTGTGAAACTTGTGGTAAACGATACAGTTCCAGAAATTTATTAGAGGAACATATTAATACACATACAGGTGTACGTCCATATGTATGTGAAAATTGTGGTAAAGATTTTGCTTCAAAATATACTTATAAAGCACACTCAAAAACACATGAAATACGACCTCGTCCTTACGAGTGTTCACAATGTAACAAAACATTTTTGAGCCAACAAAATCTTAATCAACATGAAAGAACTCATTATGGTGTAAAGGAGTATGTTTGCCACCAGTGCGGAAAAGCCTTTGGTTCACCACATAATTTAGAAGTGCACAATATAGTACATACTGGTTACAAACCATTCATATGTAGAGTATGTGGTAAAGCATTTGCCCGTAAAGCTGAAATAAGGGACCATGAAAGAACACATACTGGAGAGAAACCATATCAGTGTGAATTTTGTGGAGCCACATTTAGTCAACGATCAAATTTACAATCGCACAAGCGTGCAACGCATTATAATGATAAACGGTACAAATGTGATGATTGTGGAAAAGGATTTAAACGGCGGAGATTATTAGACTATCATATAAAAGCAGCTCATACTGGTGAAAGACCGTTCAAATGCAATACATGTACAGCAACATTTGTATATCCCGAACATTTCAAGAAACATATGCGTATACATACTGGAGAGAAACCTTATCTCTGCGAGGTTTGTGGTAAAGCATTTAATAGCCGAGATAATAGAAATGCGCATCGGTTTATACATAGTGATAAAAAGCCATATGAATGTCTAGTATGTGGTATGGGTTTTATGAGAAAACCTTTGTTGTATGCTCATATGCAGACTCAGGGACACTTAAATGATACTATTGTGGTGAATCAACCGCGTCTTACTACGGAAGATGATCAAGTTATAACAATCTCTGATGGCAACGTGGAACTTCTAGTAGATGAAGCGGAAAATGACCAGTTGGATGAAACTGAACTGTATGTAACAGAGTTAAAAGATCATGTTATCATACAGCAGCAAAATGAGGATCAAATGTATAACGAAGAAGATGTATTAAATATTCCGGCAGAGGAAAATGTTGCAGACGAGGAAGTAAATCATCTCGTTGATGGAGAAATGAACTTCGCCGAAAATGAAGTAATGGAATGCAAAACTGAAGATTCGGAGCAAGTAGAAGAGGTATATAACTACGATGAAGCGGACGAGGAAAAAATAATTGTACCAACTACCTCAGAGTACAAAGAAGTGAAAGAAGAGAAAAATGCTGTACGATTAGTAGAAATTCGATTTCCAACATCAGTTGATGGAGGAAGCCGAAGTTGGTTAGGCTTAGTACAAAACACATGA
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNNIEIFNENSVTSSEKPLVDAICTVLETDLNKENVHSLVICKKCYKLFNEIDELESRLTEVKLELFNNYKKTIKKISDIKNEEEYNDHDYIENTESQDTDGEIRYIKKDESEIQEMEGEEERIEEEEEEPSCEPEEIILKVDAIPETSNTEERKRIKRTKATSNVEPPQEQIVARDGSLYTCLLCTNKDDKVVGDAKSIIAHVRGVHETRLYICDICGDDFRKRNVLSIHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSRNLLEEHINTHTGVRPYVCENCGKDFASKYTYKAHSKTHEIRPRPYECSQCNKTFLSQQNLNQHERTHYGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPFICRVCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPFKCNTCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITISDGNVELLVDEAENDQLDETELYVTELKDHVIIQQQNEDQMYNEEDVLNIPAEENVADEEVNHLVDGEMNFAENEVMECKTEDSEQVEEVYNYDEADEEKIIVPTTSEYKEVKEEKNAVRLVEIRFPTSVDGGSRSWLGLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00230172;
80% Identity: -