Bcon000101.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- -
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000095.1:752438-757650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.13 9.9 6.7 2.3 1 23 191 213 191 213 0.94 2 18 0.00017 0.013 15.7 0.5 2 23 248 269 248 269 0.98 3 18 0.0015 0.11 12.8 0.7 1 23 427 449 427 449 0.96 4 18 0.002 0.16 12.3 0.6 2 23 453 474 452 474 0.96 5 18 0.05 3.9 7.9 1.8 1 23 547 570 547 570 0.95 6 18 0.02 1.5 9.2 0.1 1 19 576 594 576 597 0.81 7 18 0.00056 0.043 14.1 4.3 2 23 679 700 678 700 0.96 8 18 2.6e-05 0.002 18.3 3.7 1 23 757 779 757 779 0.97 9 18 0.00024 0.019 15.2 0.6 1 20 784 803 784 805 0.94 10 18 0.013 1 9.8 1.0 2 23 816 837 816 837 0.98 11 18 2.3e-05 0.0018 18.4 0.6 2 23 876 897 875 897 0.97 12 18 2.1e-05 0.0016 18.6 1.6 1 23 902 924 902 924 0.95 13 18 3.5e-05 0.0027 17.9 3.7 1 23 930 952 930 952 0.98 14 18 3.8e-06 0.00029 20.9 0.4 1 23 968 990 968 990 0.95 15 18 7.4e-07 5.7e-05 23.1 0.6 1 23 996 1018 996 1018 0.98 16 18 3.3e-05 0.0026 17.9 0.2 1 23 1024 1046 1024 1046 0.97 17 18 0.00012 0.0095 16.2 4.1 1 23 1052 1074 1052 1074 0.96 18 18 0.008 0.62 10.4 0.3 1 20 1080 1099 1080 1101 0.89
Sequence Information
- Coding Sequence
- ATGGAGGAGGTAATCGATCAAACTATCGCTACAGAGCAGACATCGGAAGAGTGCCTGAGTCATGAAGAAGAGGGCATTAAAGTAATCATAGATGCTCCCATTAATGAAGAAATGTTAAAACACGAAAACGGGGATAACGATTGTCTTGAAAATATTTCAACGGTAGAACACGCTTATCTATTACAGCAAGAATGTATATTATCTAGCACGAATGAGCAGGAGCAGCAACAACAGCATCTTGATCAACATCAACATCAACTTCCCTCCGAAGAATCGTTTCAGCGGGAGGATTGCACCGAGTACGTAGATCTATTGGTAAGAGCAGCTGATGCAACGACAAAACAAGAAGACGAGCAGGAAGATGAAGAAGAAAAATCGGATAATACGAACACGGATGTTCAGCCAGAGGCAGATTCTCAGTGTCAAAATGAAACAAGAAGAAGCAAACGCAAATCAGTTCGACGAAATGTGGAAACGACGCGAGATTCCGACGAAGAAAACTATTTTGAAAATTTGAATTTAAGTTTGAGACTAAAAAAAATTCAGTCCTCTGATCACTCGGAAAAAATTTTTCTATGTTATCTGTGCGACAAGGAGTTTTTGTCGAAGAATGTTTTGAAAGAGCATATGCATTCTCATGAAGAAGTTAGAAAGGTATTGTCTCTGCAAAAAACACTGGAAACACCGCAAAAGAACGTTTGTAATCCTGAAAAGTCTCCTCCATCCAGTAAGAGAACAAACGAATGCCCGTATTGTGGCAAGCAATATGTATATATAACCTCATATAGTAAACATTTGAGAAAACACGAAGGGCAGAATGAATCAACGCTCTCAGAAATATCATTCCAAGAAGACGAAAATAGTGTAGATGCTGATGATTGTAAAGATGCACGTCGACATTTGGATAACGAGTTTCGGAGAAAATCGAAACGAAAAGAGGTGGGTCCAGAAGAGCATAGAGAGGAAGAAAAAGGGAACGAGGTGAAAAGAGGCAATAACGGTGATGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACAAGTGGGTAATTTGATTAAAAAAAAGGAACAGAAGAAACACAATGTTCGTAGAGAAACGTTTGCATGCGACAAGTGCGCAGAGAAATTTTATACGAAACGTGGCTTACGAAAACATGCGATTTCGCATGTTGTTCTCAGTTGCAGCATATGCGAAGAAGAATTCGATTCACTGGAAAAATTAAGAAACCATCGCACGAAACACGTGGTTGAAGGTGTTCTAACTGAACAAGAACTTGAGATGGATACAAAATCTGCAATTAATAAGGAAACTTGTGATTACAAGACAGAGGATAAAGATAGTATAGACAGGAATCACAGGACGGAAAACAAATCAATACCAGGATTGCTGAAAACAGAAAATAATTTATCGAAGAGAAATAATAGAAACATGGAGACCCAACGTCATTCGAGGATTGACTATAGCTGCAAGGTGTGTTGCCAACGATTTGCAGTGAAAGAAATGTTACAGACACACATAGAACAGCAACATGAACGTGTAAAAACTTATAAGTGCACGCAATGTAACAAAACATTTGGTAACGAACTTATTTTACGCAATCATCTTGTAGCTACTGATCATAGGACTTTCCTTCATGGGCAAGAATATGACCCTAATAAACGTATTAAAAGAGTTGCTGCGAGAGCTGCACAAAAAATTATCGATAAAATTAAAATTGAGGATAGTTTGGAAGATTCCGACGATGAAGAGGAAAATATCGATAGAATTAATCACGCTAATATTACAGATAATAATTGTAGTCGGAATAAGCGAGAAACATCCTCACATAAGAGACATAATTGTAAGAAAGGATTGGAATGTACAAGTTGCAATAAAAGATGCAGTTCAAAGCAATCGTTAACAAAACATATGGAGCAACATATAAAAGACGAACAACAACGAGTGGTCAAGTCGGAAAAGCAAAAGCAATCGGCAGATAAGAAAGACTGGCAAAAGGACTATGCTAATGAGCAGACGTACAGCCAAGAGAATAGAGATGACGATTATGATTCGGATTTCGAAAGTGGTTTGGATTGGCCGATGGATAATCACGAATGCCCACAGTGTAAAAAACGATACAGCACGAAAAAATCATTGTTACGTCATCAATTGTTGCACGAAGAACCAAATTTTGAATGCGATATTTGCAATGCCAAGTTTTACCGCAAAGACAAACTAAAAGCCCATTATGATAAGTGTTCGGAGAAGAACCCCGATCAAGTGAGAAAATGCAATATCTGTGGAGACACGTTTGAGAACAACGAGATTCTGCGAAAACATAGATCGAAACATGTTACCGAAGGTATTCTTACTGAAGAAGACCTGAGAGATATCGAACCGCGACCCGAGGAAAGAAGGCTAGGTGAAAAAATTGGTAGGAAGAGAAGGACTGACATTGTAGGTTTAGAGTGCACGGAATGTAACAAGCAGTATACATCGAGAAAAGGACTTTTACGACATATCCAAGTTCACGAAGGAAAAAAGTATCTGTGTGATATATGTCCAAAAAAATTTTATAGAAGGGAACATTTAAAGATACACGTAGCTAAACATAACATGGTTAAACCATATAAGTGCACACGATGCACGAAGCGTTTCAGTAAAGAGGACCAGTTGACAAATCATTTGTCAAAGCACGATCGAACTTTCAAGAAGAATAAAGAAACAGACAGCTCGAAAAGATTCCTTTGCGAAATCTGCTCGAAAAGCTTTACGCAATCAACGACATTGATCGCACACCTTCGCGCGCATAATGGTATAAAGCCATTTATTTGCGAAGTTTGTTCGCGACCGTTCACAACTAACGCTTATTTAAAAATGCACATGAGAACGCATACGCAAGAACGGCCGTATATTTGTCAATATTGTTCACGAGCATTTGCTAGAGCCGATACGCTTGCTAATCATTTGACTTCGCATACGGGTGAGGCTAAATATCATTGTAAGTACTGTCCGAAAAACTTCCGTCGTCTGAAGTCGCTCAAAGAACACGTTTTCATTCATACTGGCCAAAGACCTTATGCGTGTCCAACATGCGATAGACGGTTTAACAACAATGGAAGTCGATACGCTCACAGTAAAAGGTGTAAACAAACTTTTATTCAAAATCAAAATCGTGCTCAAACACTAACCGCGCAAGTAGAGGCTATACCTCAAAATCAACCAAGAATAATACAACAGACTACTATTGAACCAGGACAAATAATAAAAGCACAAAATATTAAAACCATTACTATCGCTAAACCTGAATCAGTTACCACTCAACAGGTTATGCAACTTCAAGAGATATTAATGCCTTTGATCCTTCCTCTTACAGTCACTCTTACGGATGTCGGTGAGGAAGTAATATTACCAGAAGGAACCAAAATATTTACTACAACTTAA
- Protein Sequence
- MEEVIDQTIATEQTSEECLSHEEEGIKVIIDAPINEEMLKHENGDNDCLENISTVEHAYLLQQECILSSTNEQEQQQQHLDQHQHQLPSEESFQREDCTEYVDLLVRAADATTKQEDEQEDEEEKSDNTNTDVQPEADSQCQNETRRSKRKSVRRNVETTRDSDEENYFENLNLSLRLKKIQSSDHSEKIFLCYLCDKEFLSKNVLKEHMHSHEEVRKVLSLQKTLETPQKNVCNPEKSPPSSKRTNECPYCGKQYVYITSYSKHLRKHEGQNESTLSEISFQEDENSVDADDCKDARRHLDNEFRRKSKRKEVGPEEHREEEKGNEVKRGNNGDGGGGGGGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQVGNLIKKKEQKKHNVRRETFACDKCAEKFYTKRGLRKHAISHVVLSCSICEEEFDSLEKLRNHRTKHVVEGVLTEQELEMDTKSAINKETCDYKTEDKDSIDRNHRTENKSIPGLLKTENNLSKRNNRNMETQRHSRIDYSCKVCCQRFAVKEMLQTHIEQQHERVKTYKCTQCNKTFGNELILRNHLVATDHRTFLHGQEYDPNKRIKRVAARAAQKIIDKIKIEDSLEDSDDEEENIDRINHANITDNNCSRNKRETSSHKRHNCKKGLECTSCNKRCSSKQSLTKHMEQHIKDEQQRVVKSEKQKQSADKKDWQKDYANEQTYSQENRDDDYDSDFESGLDWPMDNHECPQCKKRYSTKKSLLRHQLLHEEPNFECDICNAKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILRKHRSKHVTEGILTEEDLRDIEPRPEERRLGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFSKEDQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFICEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQTFIQNQNRAQTLTAQVEAIPQNQPRIIQQTTIEPGQIIKAQNIKTITIAKPESVTTQQVMQLQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215850;
- 90% Identity
- -
- 80% Identity
- -