Bcon006267.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- -
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000015.1:2084824-2088955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0024 0.18 12.1 0.0 1 20 124 143 124 145 0.95 2 19 0.048 3.7 8.0 2.3 1 21 162 182 162 183 0.96 3 19 0.00012 0.0091 16.2 3.0 2 23 218 239 217 239 0.94 4 19 0.00017 0.013 15.7 2.2 1 23 243 265 243 265 0.97 5 19 0.00023 0.017 15.3 0.8 3 23 273 293 272 293 0.97 6 19 1.8e-05 0.0014 18.8 3.6 2 23 300 321 299 321 0.96 7 19 0.55 43 4.7 3.0 1 20 330 349 330 353 0.79 8 19 0.16 12 6.4 0.2 3 23 360 379 359 379 0.95 9 19 0.43 33 5.0 2.3 3 13 387 397 386 400 0.89 10 19 0.04 3.1 8.3 2.4 1 23 483 505 483 505 0.97 11 19 2.1e-06 0.00017 21.7 1.8 3 23 516 537 515 537 0.96 12 19 0.00013 0.01 16.1 4.9 1 23 543 565 543 565 0.98 13 19 0.033 2.5 8.5 0.4 1 23 569 591 569 591 0.97 14 19 4.1e-06 0.00032 20.8 1.5 3 23 599 619 597 619 0.97 15 19 1.2e-05 0.00092 19.4 0.2 1 23 625 647 625 647 0.98 16 19 0.074 5.7 7.4 0.9 1 23 653 675 653 675 0.97 17 19 3.6e-07 2.7e-05 24.1 0.1 2 23 682 703 681 703 0.97 18 19 6.3e-07 4.9e-05 23.4 0.6 1 23 709 731 709 731 0.98 19 19 1.1e-07 8.7e-06 25.7 1.9 1 23 737 759 737 759 0.99
Sequence Information
- Coding Sequence
- ATGTCCAATCATTGTTATCAAACTCATATAGAACAATGGTCTCCTTTTCTATTCTCGGTTCATGTGATCGATATTTTTATAAAAAAAAGAAAAACATCAGCTGCTATCGGCAAAGAAAACAAATTTAGCTTTGAAGATAAAATAAAGCAAAATTGGAATCAAGTACATTTCCAGACACCACCCTCCCTTGACTCGACGTTTCATGAAAACTGCATTAACTACTTAAGTAACGTCCTCGTTCTACCGAAAAGCGTGAAGACGATACCAGCCAAACGGAATCAGTCTCGCAGCGCTAAATCGAACAACGAGGAAGCTCGATCGTTTGCGAACGAAGTGGTCGATAACTGTCTCGTCGTCCAGGAAGCATCGTATCGATGCGAGTCCTGTGACGAGGAGTTTGACACGAAGGCTGCTCTGTTGGTACACAGAACGGAGCTATCGATCGTTCGAACTCGCGAAGCACTGAAAAAAGCTGAAAAAAAATACACGTGCGACGCGTGCTGCGAAAGTTTCACGAAGAAGGTGCAACTGTTCAAGCATCGACGAGGTCGATGCAAAGAGTCGACGATAGCTGAGAGCAAACAGCATAAAGCGAAGGACAAAACGATAAAAACGAAACGAAAGGAATCTAATGTCTCTACTGATCCGATCGAGTGCAACGTGTGTCATAAAGTTTTTAAGAAGAAGAAATATCTAAATGTTCATAAAACGTTGCACGGGGCGCCACATATTTGTCACGTGTGTGGTGCCAAACTGACTTCTGAATACTATTTGAAGATTCACATTAGGAGACACAATAAAGAATTCACTGAATTTTGCCAGGTGTGTAACAAGGGATTTTACTTAAAGGCAACGTTGAAAACGCACATGAGCGTGCATAGTAACGATAAACCGTGCGTTTGCGAGGTTTGTCACAAGTCTTTCGGCAATAGAGTCTATTTGAGAAGTCACATGAAGATTCACAGTCAGCCTGAAAACAGGAGGAAGTACAGATGCGAGATTTGCGGGTTCGAGACTTTCTACAGTTACTGTTATAAGGAACATGTGTGGACGCATACGGGAGAAAGTCAGGTGGCTTGCGAGGTTTGCGGTAAATTGATCAGGAGACAGTATATGAAGATTCATATTAGGATACACACTGGTGAGAAGCCGGAGATCTGTGAATTTTGCGGGAAAGCGTTCAGTTCGAGGAAGTGTCAGGAGATCAGCATGGAGGAAGCGAAAATAGAGCAGATAGAAACGCTCGAGGATATGGAACTGGTCAAGTACCAGAATGACGTTTGCACGGTCGAAGAGTTCGAACAGATCAGTCATCAAGAGATAGTAACGGACATGTTAGAAGAAAGTAACGACGCGGAGATGAAACTGATTCTAGAGGACGAAGAAACAGGGAACCTTAACATAGATTATAATAATAAATACGAGAGCAGAAGATGCTCGGTCATTTATGAATGCGACGTATGTAACAAAAAAATGCGCAAGAAGCTTCAATTTCTAAAACATAGGCAGGATCATGAAAGGAATTACGAAGAAGGTGGTGGCCATTGCGAGGAATGTGATAAAAGTTTCACGGATGAAGAGAAACTGAAGAAACATATGATCAAAGTGCATCAAAAGGAGAAGCCTTTTCAATGTGTTCTCTGTAACAAATGCTTCAAAACCGAAGAATTCTTGAAGACACACCTGAAGCAACACAATAAACGTTTCACGTGCGATATCTGCGGTATCTCGAAGGTGTCTGGCTACGATCTTCGTTTACATAAAAAGAAGCATAACGAGGAATACGTGACGCACTGTGAAATTTGCGGTAAAGGCTTTTACACGAACCAAACCCTGGAAAGACACTTGCTCACTCATACCGGGGAGAAACCATTCGTTTGCAAGGTGTGCAACACCCCTTACGCGAGTGCCGCGTATCTGAATACGCACATGAAGTCTCACGGCGAACGAGAGAAACACAAGTGTAATATTTGTAATTTTGAAAGTTACTGGAAGGCGGCTCTAAAGGTGCATCTTAAGATACACACAGGAGAGAACCTGATCACCTGTGAGATATGCGGGAAATCAGTCTCGAGTAAAGCTTATCTGCAGATCCATATGCGTATACATTCTGGCGAGAAACCACATGTTTGCGAAGTATGTGGCAAGGCCTTCAGCGTTCGAAAATATCTGATCGTACATTTGAGAACGCATACAGGTGAAAGACCGTATGAATGTAAGGTATGTCAGAAAAGGTTCACGCAGCAGGGTTCGCTGAATTCGCATATGAAGTCGCATAACGAAAGGAAGTGA
- Protein Sequence
- MSNHCYQTHIEQWSPFLFSVHVIDIFIKKRKTSAAIGKENKFSFEDKIKQNWNQVHFQTPPSLDSTFHENCINYLSNVLVLPKSVKTIPAKRNQSRSAKSNNEEARSFANEVVDNCLVVQEASYRCESCDEEFDTKAALLVHRTELSIVRTREALKKAEKKYTCDACCESFTKKVQLFKHRRGRCKESTIAESKQHKAKDKTIKTKRKESNVSTDPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCQVCNKGFYLKATLKTHMSVHSNDKPCVCEVCHKSFGNRVYLRSHMKIHSQPENRRKYRCEICGFETFYSYCYKEHVWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEISMEEAKIEQIETLEDMELVKYQNDVCTVEEFEQISHQEIVTDMLEESNDAEMKLILEDEETGNLNIDYNNKYESRRCSVIYECDVCNKKMRKKLQFLKHRQDHERNYEEGGGHCEECDKSFTDEEKLKKHMIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00215160;
- 80% Identity
- -