Basic Information

Insect: Bombus campestris
Gene Symbol: -
Assembly: GCA_905333015.1
Location: HG995126.1:2450437-2453750[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.5e-13 1e-09 37.8 0.0 1 39 308 347 308 351 0.90

2 4 2.2e-12 4e-09 35.9 0.1 2 39 363 400 362 403 0.94

3 4 6.1e-19 1.1e-15 56.9 0.0 2 45 418 462 417 462 0.97

4 4 7e-19 1.3e-15 56.7 0.1 1 42 469 511 469 512 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.5e-13	1e-09	37.8	0.0	1	39	308	347	308	351	0.90
2	4	2.2e-12	4e-09	35.9	0.1	2	39	363	400	362	403	0.94
3	4	6.1e-19	1.1e-15	56.9	0.0	2	45	418	462	417	462	0.97
4	4	7e-19	1.3e-15	56.7	0.1	1	42	469	511	469	512	0.97

Sequence Information

Coding Sequence: ATGAAACCATACCCACTGAAACGAGCCTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACTCCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTATAAGAGGCCCAGAACCACGTTTGAACCTCGCGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGTAGCAGTAACAATAGTACCACTACTGGTACCaccaataacaacaacaacaacaacaacaacaacaataataacaacgCTAGCAGCAACGGCAACGGTAACAATACGagcaacaacaataacaacggtgACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGCGCCACATTGGTCGGTACTACGATTACACATTTAAGGGACCCGGATCATCATTCCACAGAGATCCAAAATTGTGACAGTGTGAAGATCAAGTTCGAAACATTGCACACGATGGATTCGTCGGACACGATCGATATCGATAGCCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGATAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGTTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGATATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCGCATCGACTGGGCATCGATACTCCAAAAAAAGACGGACCTACTAAGTCGTGGAGCGATGAGAGTTTAAACAGCGCGCTAGAAGCGTTACGGACCGGAACGATATCGGCGAACAAAGCTTCGAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCCGCGCCGTTCAACGCAAGTCCCACAACCTGGTCGCCCGCCGATCTGGATCGCGCCCTCGAAGCGATACGTTCTGGTCAAACGTCAGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGGACATTATATGGTCGATGCAAAAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAGGATGCTATGACCGAAGCTCTCGAAGCTGTCAGGTTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTACAACCTGCCCTACTCTTCCTTATACGGTCGCTTCAAAAGAGGAAAATACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
Protein Sequence: MKPYPLKRASLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRSSNNSTTTGTTNNNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00230773;
80% Identity: iTF_00223100;