Bbre006247.1
Basic Information
- Insect
- Bombus breviceps
- Gene Symbol
- bab2
- Assembly
- GCA_014825925.1
- Location
- CM026187.1:1532524-1558327[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.8e-13 1.2e-09 37.5 0.0 1 39 410 449 410 453 0.90 2 4 2.7e-12 4.7e-09 35.6 0.1 2 39 465 502 464 505 0.94 3 4 7.6e-19 1.3e-15 56.6 0.0 2 45 520 564 519 564 0.97 4 4 8.7e-19 1.5e-15 56.4 0.1 1 42 571 613 571 614 0.97
Sequence Information
- Coding Sequence
- ATGGTAAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAATAACTATCAGTCGAACATGACGTCCGTTTTCCACCAACTCCTTCAGACGGAAGCTTTCGTCGATGTTACCTTAGCATGCAACGAAGCTTCTTTAAAGGCACACAAGGTGGTACTATCGGCGTGCAGTTCCTACTTTCAAAAGCTTCTACTTTCAAATCCCTGCAAACATCCGACGATCATTATGCCCCAAGATGTGTGCTTCAATGATCTCAAGTTCATCATAGAATTCGTCTATAGAGGAGAGATCGACGTTTCGCAAGCGGAACTTCAGTCACTGTTAAAAACAGCCGATCAGCTAAAGATCAAAGGACTGTGCGAGGTACCTGAAAGCAGAGACGGGCCACCATCGGTAAGTCTGAGTTCGCCGCCAAGAGAACCCGGTACACCTAGAATAAATTTCACCAAGTTGAAGAGACATCATCCAAGGTATAAGAGGCCCAGAACCACGTTCGAACCTCGCGCTACGGATTCGAGGCATTACGATCGATACAAAGAAGAGGAATCGAACGAAAACTACGATTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGCACGGAGGCAACCGCGGGAGCAGTAGTCTTGGAAACTTGCCAACGTAGCAGTAACAATAGTACCACTACTGGCACCAccaataataacaacaacaacaacaacaacaataacaacaacaacaacaataataacaacgcTAGCAGCAACGGCAACGGTAACAATACGagcaacaacaataacaacggtgACATGTTTTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGAGAGGTTGACCTACCTCCAGAAACTCAACCTACACCACCAAGTGCCACATTGGTCGGTACTACGATTACGCATTTAAGGGACCCGGATCATCATTCCACAGAGATTCAAAATTGTGACAGTGTAAAGATCAAGTTCGAGACATTGCACACGATGGATTCGTCGGAcacgatcgatatcgatagCCACATGTCGGATCGAGCGAGCGTCAGTTCAAAGAACGCGGCCGACAGCGACAACATGATGATGATCACACCGGAGTTGCTTGGATTAATGCCTTCTGGAAGTTCGGTTCACTCGGATTCCGGTGAAAATAACTCAAGGGGTCACCCCGGACAATCCAGCTCTCATCATCATGGTTCGAAATCGTGGACGCAAGAGGACATGGATGCCGCTTTGGAAGCCTTACGAAATCACGATATGAGCCTTACGAAAGCCTCCGCAACGTTCGGTATACCCTCGACGACTTTATGGCAAAGAGCACATCGACTGGGCATCGACACTCCAAAAAAAGACGGACCTACTAAGTCGTGGAGTGACGAGAGTTTAAACAGCGCGCTAGAAGCGTTACGGACCGGAACGATATCGGCGAACAAAGCTTCAAAGGCGTTTGGTATACCGTCGAGTACCTTGTACAAAATCGCGAGAAGAGAAGGTATCAGGCTGGCTGCGCCGTTCAACGCAAGTCCCACAACCTGGTCGCCCGCCGATCTAGATCGCGCCCTCGAAGCGATACGTTCTGGTCAAACGTCAGTACAGAGAGCTTCCACGGAATTCGGTATACCGACGGGAACGTTATACGGTCGATGCAAAAGAGAAGGCATTGAACTCAGTAGGAGTAATCCTACACCGTGGAGCGAAGATGCTATGACCGAAGCTCTCGAAGCTGTCAGATTAGGCCATATGAGCATCAACCAAGCGGCTATTCACTATAACCTGCCCTACTCTTCCTTATACGGTCGATTCAAAAGAGGAAAGTACGAAGAACCAGCGGTGGGTGAAATATCGCAAGACGGTAGCAGTCCTCACTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTGTACCCGATCAAATGCCGTACCAAGGCAGCTGA
- Protein Sequence
- MVSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLETCQRSSNNSTTTGTTNNNNNNNNNNNNNNNNNNNASSNGNGNNTSNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHPGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00230773;
- 80% Identity
- iTF_00215117; iTF_00216987; iTF_00222436;