Bbif000297.1
Basic Information
- Insect
- Bombus bifarius
- Gene Symbol
- ham
- Assembly
- GCA_011952205.1
- Location
- NW:2026588-2049556[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0021 11 5.5 0.1 26 45 258 277 251 280 0.90 2 3 0.00071 3.7 7.0 0.5 21 45 281 305 277 309 0.89 3 3 8.3e-06 0.044 13.2 0.1 20 45 309 334 305 342 0.88
Sequence Information
- Coding Sequence
- ATGAGCGGATATCTCGGTAACATTCCCCTGCCCCCAACGTTGTTGCACGACCCGAAGTACCCTCCAGCCATGCGGGAGAAAGACTCGAGTCCGAGAAAAATGCCGGGCCACATCAGCCCGAAGCAAGCCAGCATCTATCCGTTGAGCGTTCGCGTGCCGGACGTTGAAGAATTGCCATACGATTTGAGCCACGGCCACGGTCGTGGCCTGTCGAGTCCCACGAATCAACAGCAACATCGGCAACAGCCGCATATGAGTCCGGCGGCTAGACCACCTCAATCTCATCATCAGGAGGATCTCGACTGCGAACCGTTGGATCTTCGCGTCGATCACAAGAAGGAAAGACTCACGGACGAGAATCAGAACGAGATAGAGGTTCTGAATCAAAATAGTCTCGGCGGAAGTCTTCCCTATCATACGGTTCTGTTTCCTCAGCATCATGCCGTTCATCCGTTGGTCCTCGAAGCCATGTACCGGTCGCACCATCACAGTTCGTCGGTACCAGATCTGCCTAAAATCCAAGTGCGGGCGTTACCGACCATGGTACCATTGCCACCGAACAGATTCTCTTCCACCACTTCCTCCACGTCGTCCTCTTCCTCTCAGGCTGCCGCGAGAGTTCCGAGTCCCTCGAGTGGCCAGCAACATCAGCCACAGCAACAAAGTCACTCGAGtcaacagcagcagcaacagcagcagcaacaacaagCTTCCAATCTTCCACCTTACTCCATCAGCGTTCAAGCCGGTCTAAAGCCGAAGGACAGATACTCGTGCAAATTCTGCGGTAAAGTGTTCCCCAGATCGGCGAACCTGACGCGGCACCTGAGGACGCACACCGGCGAGCAGCCGTACAAGTGCAAGTACTGCGAGAGAAGCTTCAGCATCTCCAGCAACCTTCAACGTCACGTCAGGAATATCCACAACAAGGAAAAGCCGTTCAAGTGTCCGCTGTGCGAACGATGTTTCGGACAGCAGACCAACCTGGACAGACACTTGAAGAAACACGACGCCGATGGCCCAACGATACTGGACGAAGTTAGATCGAGGTACCACGGACAATTGCCGAGAGCGGACGAGTCTTACTTCGAAGAGATTCGCAGTTTCATGGGCAAGATCACCTCGCAGAGACAAGGAATACCGTACTTCCCTGGTCTGCTGGGTCATGGAGGAGACGATTTCAGGAACGACAAACAACAACTTCAGCTGGAAGAGAAGAGAGGCGATTCTTCCTACTTCAGCGACAGGGATAACCTGAGCTCGAGGTCGAGCAGCACCGCCAGCAGACCCGAGAGCGTGCAAGAGGAGCAACGAGAAGTTAATTCCCCGCCATTGTCCCCTGGAAATAACACCTGA
- Protein Sequence
- MSGYLGNIPLPPTLLHDPKYPPAMREKDSSPRKMPGHISPKQASIYPLSVRVPDVEELPYDLSHGHGRGLSSPTNQQQHRQQPHMSPAARPPQSHHQEDLDCEPLDLRVDHKKERLTDENQNEIEVLNQNSLGGSLPYHTVLFPQHHAVHPLVLEAMYRSHHHSSSVPDLPKIQVRALPTMVPLPPNRFSSTTSSTSSSSSQAAARVPSPSSGQQHQPQQQSHSSQQQQQQQQQQQASNLPPYSISVQAGLKPKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHDADGPTILDEVRSRYHGQLPRADESYFEEIRSFMGKITSQRQGIPYFPGLLGHGGDDFRNDKQQLQLEEKRGDSSYFSDRDNLSSRSSSTASRPESVQEEQREVNSPPLSPGNNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01099466;
- 90% Identity
- iTF_01069908;
- 80% Identity
- iTF_00222210;