Bsel022803.1
Basic Information
- Insect
- Boloria selene
- Gene Symbol
- -
- Assembly
- GCA_905231865.2
- Location
- HG993159.1:1492804-1499151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.059 5.5 8.3 0.2 1 23 75 98 75 98 0.95 2 36 0.19 18 6.7 0.1 2 23 125 147 124 147 0.94 3 36 0.11 10 7.5 0.9 2 23 170 191 169 191 0.97 4 36 0.042 3.9 8.7 0.1 1 23 195 217 195 217 0.97 5 36 0.036 3.4 8.9 0.3 1 23 222 245 222 245 0.95 6 36 0.0032 0.3 12.2 2.6 2 23 253 275 253 275 0.97 7 36 0.003 0.28 12.4 0.9 1 23 281 304 281 304 0.97 8 36 5.1 4.7e+02 2.2 7.3 1 23 310 332 310 332 0.75 9 36 1.1e-05 0.001 20.0 0.9 1 23 338 360 338 360 0.99 10 36 0.15 14 7.0 2.4 1 13 366 378 366 382 0.90 11 36 0.59 55 5.1 0.2 3 23 456 477 454 477 0.95 12 36 0.00044 0.041 15.0 1.0 2 23 547 568 546 568 0.97 13 36 0.00068 0.064 14.4 0.0 1 23 572 594 572 594 0.98 14 36 0.0014 0.13 13.4 1.2 1 23 599 622 599 622 0.97 15 36 1.7 1.6e+02 3.7 0.8 2 23 630 652 630 652 0.94 16 36 4.2e-06 0.0004 21.3 2.9 2 23 660 682 659 682 0.96 17 36 1.7e-05 0.0015 19.5 0.8 1 23 688 710 688 710 0.98 18 36 7.6e-07 7.1e-05 23.7 1.4 1 23 716 738 716 738 0.99 19 36 0.0043 0.4 11.9 0.7 1 23 842 865 842 865 0.90 20 36 0.057 5.4 8.3 0.1 2 23 892 914 891 914 0.97 21 36 1.3 1.2e+02 4.1 2.4 2 23 937 958 936 958 0.96 22 36 0.38 36 5.7 2.0 5 23 965 983 959 983 0.92 23 36 0.00081 0.076 14.1 1.5 1 23 988 1011 988 1011 0.96 24 36 0.042 3.9 8.7 0.4 2 23 1019 1041 1019 1041 0.96 25 36 0.00021 0.02 16.0 6.1 2 23 1049 1070 1049 1071 0.95 26 36 0.0034 0.32 12.2 1.9 1 23 1077 1099 1077 1099 0.97 27 36 0.019 1.8 9.8 0.4 1 23 1159 1182 1159 1182 0.94 28 36 0.0068 0.64 11.2 0.1 2 23 1209 1231 1208 1231 0.95 29 36 0.57 53 5.2 1.5 2 23 1254 1275 1253 1275 0.96 30 36 0.056 5.2 8.4 0.1 1 23 1279 1301 1279 1301 0.97 31 36 0.51 48 5.3 4.1 1 20 1306 1325 1306 1327 0.92 32 36 7.4 6.9e+02 1.7 2.4 2 23 1337 1359 1336 1359 0.89 33 36 0.26 25 6.2 2.3 2 23 1367 1389 1366 1389 0.94 34 36 0.00024 0.022 15.8 2.2 1 23 1395 1417 1395 1417 0.96 35 36 3.1e-05 0.0029 18.6 2.7 1 23 1423 1445 1423 1445 0.98 36 36 0.00024 0.022 15.8 4.4 1 23 1451 1474 1451 1474 0.97
Sequence Information
- Coding Sequence
- ATGCGATTGATGAGATATCTCATCAGTATCCGACCTGAAAGTAAAGCAAATATCACAGGTGTGGTACTCAAGCTTGTGCGAAAAGTTACCCCAAAAACCAATATTGACAATGTTCCCAAAACAAGTCAAGGAAAATATGAACTTACTAGACATTTGATAAATGCTAGAGAAATCTTCACTTGGTCTAATGCTACGCCAATTCGGAAGCAAATAGATGTGGGTTATGTTTGTTGCTTTTGTGACGCCGCATACCCTGAACCAGCTCTGTTGAAACAACATACCATGGAGAGCCACGACGGCATAACTAATAGTAGCTTCACTAAAAGAAGGGATCTAAATGCATTTCACATAAAAGTTGACATAACAGGTTTAAATTGCAAAATTTGCAAGCAAGATTTAGATGATCTTGACAAACTAATAATACATTTAAAGGAAGATCACAATAAAAGACTTTTTCCAGAAATCAAAAATCACATGATACCATTCAAATTTGAGACGCCTTCCTTACAATGTTTCATTTGTTCTAGTGAATTTAGCAAATTCAAAAGCATGTTGGAACATATGAATATTCATTGTAGGAATTATATTTGCACTGTGTGTGAAGCTGGCTTTATTAACAGAAGACGACTTATAGTACATTCAGAGACACATAAAATGGGTGTTTTCCGATGTGCGATGTGCCCTGAAGAGTTTACAACGTTAGCAAAACGAAAATCGCATGTTATTTCAAACCATAAGCCAATCAAAAATAGAAATAGATGTGGCCATTGCAATGAAACTTTCAAAGATTATAATCAAAAGCAAAGGCACTTAATAACCGTCCATAACTTAAGCAACCAGTATAACTGCAACGCGTGTGAACGAACTTTCCCTACAAGAAAAGCTTACAGAGTTCATACGCAAAGAGACCATCTGATGGAGAGAAGATTCAAATGCACCGAATGTGATAAAACTTTTTATTGTGGATATACTTTGAAATGCCACTTGTTGAAGCATTCAGGATTAAGAGAGTTTCAATGTGATATATGTCTGAAGACTTACGGACGAAAGTCGACATTGCGAGATCATTTGAGAATACACGCAGATGATAGGCGGTTCAAGTGCGAGCACTGCGGACAGGCTTTTGTGCAGAAGTGTTCTCGACAACAAATAGTCGTCGTATCTGGGGGAAAAGCGCAGAAAGTACTTCAAAACCTACAAAAAACCAATGATAATACAATTAAGAAGAAGCAAGGAAAGATAAAAACAAGTATAGATGATGATAAACGAATGCTAGAAGTAGAAAAACACAGAAATAATATGAGTGAAATTTTGCTCCATTCTAACGCTACACCAATTCGTTTTAAAGGAGATGTAGGCTATGGTTGCTCTTTTTGTTCCAATCAATACCCAAAACCTGCTGATTTAAAGAGCCATACAATAAAAGATCATGACGAAGATAACATTAAAAAAGTCATTGCAGATATGCGAATTTACACAGTGAAGCTAGACATAACAGCTTTACAATGTGCGCTTTGCATAACAGATATACCAACCATAGAAGAGCTCATAGACCATCTAATCAAAAAACATCAACGTATTATATACACAGATATAAAAAATCACATGGTGCCATTTAAGTTTGAGGATGATCTACTGAAATGTGCTATTTGTTTCGAGAGATTTATCAAATTTAGAAATTTGACAGAACATATGAATACACATTACAGAAATTATGTGTGTGATGTGTGCGGCGCTGGGTTCGTGAATCGGGATATTCTCAGAAGCCATTTAAGGATTCATAAGATAGGCGATTTCACTTGCGATTTATGTCAAAAAACATTCAACACTCTGGTTAAAAAACAGTCCCATATAAAAATTGTCCACAAACGATTGTACATGACAAGAAAATGCGGGTACTGCAATGAGCTGTTCGATGATTACAAGAAGAAAAACGATCATTTAGCTAAATATCATGATGTCAATCTCGTTATCCTTAAATGCGATCTGTGTGACAAGACGTTTGTTAATCAAAATCATTTGAGGCGACATGTTAAAAAAGATCATCTGATGGAGAGGAATTACGAATGTGAAGTATGCGATATGAAGTTTTTTAGTAGCGAGAATTTAAGAAAACATGTGCTAAAACACACTGGAGAAAGAGACTTTCAATGTAATGTATGTGCGAAGTCATTTGCACGCAAATTTACTTTGCAACAGCATATGCGAGTGCACTCCAAGGAACGTAAAACTTGTAAAACATCCCCAGATCGATATTTGATTATAAGTGAATCAGATGACGTAGGTGGACCGTCAGAAAGTATAAAATTCGAAGACATAAATGATAATGAAAATAAAAAGACTAGAAAAAGAAAGATAAAAAATGAATCTGAAACTGTATTTAGAAAAAAAGCTAAAATAACTATAAAAACTAAAAAGATAAAGCTTAAACCTATAAAGGAATTAACAAAACATCATCACAATATAAAAGAGATTCTCCAATGTTCTAACACTACACCGATCCATGGTAAAAATGACCTCGGCTACCTATGCTGCTATTGTACAGAACAATTTCCAGATCCTGCGGATTTAAAAAAACATACTATTGATATGCACAGAAATGCACCTAAGCCTACTTTCTTCAAAAAGAGAGATCTGCAAAAATTTTACGTCAAAGTCGACATAACTGGATTGCAATGTAATATATGCAGAACAAATATCGATGATTTGGACAAATTGATCGATCATTTAAAAACTGAGCATGACAGGAAAATTTATACGGACATAAAGAACCGTATGGTGCCATTCAAGTTTGATAGTAAAGAACTAAAATGTTTCGTTTGTGCAAACGTGTACACTAAGTTCAAAATGCTGCTAGAGCATATGCATAAGCACTGTAGAAACTTTATATGTGATTGTGGTGCCGGATTTTTCAATCGAAGATCTTATTTGAACCATCAAAAATCTCACGTTGTCGGTGAATTTAAATGTGATCAATGTGATAAAGTGTTTGATACTGCTCAAAAGAAGAATCAGCATCTTCGATTTGTTCATATACATGCATATAAACTGAACAGATGTGGATACTGCAATGAAAAATTTGCTAGTTATCGAACGAAAGCAGAACATCTTAGAATTGTTCATGGTGTAGGGTGTGAAACAGCTCAATGCCAAGCGTGCGAAAAGAGTTTTTGTAACAAAGATTCCTTAAGGAAACATATAAAGAGCCATCATTTAATGGAAAACCGACACAGTTGCACGCTGTGTGAAATGTCATTTTTTGCTAAGAAAAATTTGATGGAGCACATGGTCACACATACTAAATCTCGTAGTTTTCAATGTTTGCGAAAACGTCAGAATGAAATAAATGAAGATTCTGAACAGGGAGAACCATCGTTAAAAAAAGGCGAAGTATTGGAAAAACATCGGATCAACATGAGGGAGATTTTATTGAACTCTAACGCAACGCCGATTCGTTGTCGCGGTGTTGTGGGCTACAATTGTAGCTTTTGTGCTCTACAATTCCCAGAGCCTTCAGATTTAAAAAAGCATACCCTAGAAAAGCATGATGAGAAAACTAAAATTAATTTTATGAAAGGCAAAGACTTATACAAATTTCACGCCAAGCTTGATATAACTGATCTTAAATGCAATATATGCAACACAAGTATTAATACAGTGGAGGAGTTAGTGCGCCATCTTAAAGAGGAACATAAGAAGGTTGTGTTCACAGAAATCAAGAACCAAGTGCTACCATTTAAATTTGACTATGAAAGGCTTAGATGTTTCATATGCATGAACGTGTTCTATAAATTCAAATCTCTATTAGAACATATGAATAAGCATTGCAGAAATTACGTTTGTGAAGTGTGTAATGCTGGTTTCGTTAACCGCGCAATACTTACTCAACACTCTAATAGTCATAAGCTTGGCTCTTTCAGCTGTGATTATTGTTCAAAAATTTTTGACACATATAGCAAAAAACGGTCTCATGAAAAGTGCGTGCACACACATTCGACAACTTTGAATAAATGCGGCTACTGCTGCGAAAAGTTTCGTGATTATAGACAAAAGGAACGGCATTTAGTGGAAGTGCATGGAATAGTCGCTAAGGCATTAAAATGTCTCGTTTGTGATCAAACATTCGCAAAACAAAAGGATCACACTATACATGTTAAAAGATTTCATTTGATGGATAGAAGACATGAATGTCCCCAATGTGATATGAGCTTTTTCACATCTAATGAATTGAAAAATCATCGTGTTAAGCATACAGGTCTTAAAATCTTTGAATGCGAGATATGCCATAAGAAGTATGGTCGTAAAAAAACGTTAACAGAACACCTGCGTATACATGCAGATGATAGACGGTTCAAGTGTGAGCATTGCGGTCAGACGTTCGTACAGAAGTGTAGCTGGCGAGGGCACATGCGTGCGAAGCATGGGGAAACAGTGTAG
- Protein Sequence
- MRLMRYLISIRPESKANITGVVLKLVRKVTPKTNIDNVPKTSQGKYELTRHLINAREIFTWSNATPIRKQIDVGYVCCFCDAAYPEPALLKQHTMESHDGITNSSFTKRRDLNAFHIKVDITGLNCKICKQDLDDLDKLIIHLKEDHNKRLFPEIKNHMIPFKFETPSLQCFICSSEFSKFKSMLEHMNIHCRNYICTVCEAGFINRRRLIVHSETHKMGVFRCAMCPEEFTTLAKRKSHVISNHKPIKNRNRCGHCNETFKDYNQKQRHLITVHNLSNQYNCNACERTFPTRKAYRVHTQRDHLMERRFKCTECDKTFYCGYTLKCHLLKHSGLREFQCDICLKTYGRKSTLRDHLRIHADDRRFKCEHCGQAFVQKCSRQQIVVVSGGKAQKVLQNLQKTNDNTIKKKQGKIKTSIDDDKRMLEVEKHRNNMSEILLHSNATPIRFKGDVGYGCSFCSNQYPKPADLKSHTIKDHDEDNIKKVIADMRIYTVKLDITALQCALCITDIPTIEELIDHLIKKHQRIIYTDIKNHMVPFKFEDDLLKCAICFERFIKFRNLTEHMNTHYRNYVCDVCGAGFVNRDILRSHLRIHKIGDFTCDLCQKTFNTLVKKQSHIKIVHKRLYMTRKCGYCNELFDDYKKKNDHLAKYHDVNLVILKCDLCDKTFVNQNHLRRHVKKDHLMERNYECEVCDMKFFSSENLRKHVLKHTGERDFQCNVCAKSFARKFTLQQHMRVHSKERKTCKTSPDRYLIISESDDVGGPSESIKFEDINDNENKKTRKRKIKNESETVFRKKAKITIKTKKIKLKPIKELTKHHHNIKEILQCSNTTPIHGKNDLGYLCCYCTEQFPDPADLKKHTIDMHRNAPKPTFFKKRDLQKFYVKVDITGLQCNICRTNIDDLDKLIDHLKTEHDRKIYTDIKNRMVPFKFDSKELKCFVCANVYTKFKMLLEHMHKHCRNFICDCGAGFFNRRSYLNHQKSHVVGEFKCDQCDKVFDTAQKKNQHLRFVHIHAYKLNRCGYCNEKFASYRTKAEHLRIVHGVGCETAQCQACEKSFCNKDSLRKHIKSHHLMENRHSCTLCEMSFFAKKNLMEHMVTHTKSRSFQCLRKRQNEINEDSEQGEPSLKKGEVLEKHRINMREILLNSNATPIRCRGVVGYNCSFCALQFPEPSDLKKHTLEKHDEKTKINFMKGKDLYKFHAKLDITDLKCNICNTSINTVEELVRHLKEEHKKVVFTEIKNQVLPFKFDYERLRCFICMNVFYKFKSLLEHMNKHCRNYVCEVCNAGFVNRAILTQHSNSHKLGSFSCDYCSKIFDTYSKKRSHEKCVHTHSTTLNKCGYCCEKFRDYRQKERHLVEVHGIVAKALKCLVCDQTFAKQKDHTIHVKRFHLMDRRHECPQCDMSFFTSNELKNHRVKHTGLKIFECEICHKKYGRKKTLTEHLRIHADDRRFKCEHCGQTFVQKCSWRGHMRAKHGETV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212784;
- 90% Identity
- -
- 80% Identity
- -