Basic Information

Insect: Boloria selene
Gene Symbol: -
Assembly: GCA_905231865.2
Location: HG993141.1:9661329-9676491[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00014 0.013 16.6 3.3 1 23 420 442 420 442 0.97

2 20 0.0052 0.49 11.6 0.7 1 20 448 467 448 470 0.94

3 20 2e-05 0.0018 19.2 5.4 1 23 489 511 489 511 0.98

4 20 0.00017 0.016 16.3 4.7 1 23 517 539 517 539 0.99

5 20 3.2e-05 0.003 18.6 5.3 1 23 545 567 545 567 0.97

6 20 1.7e-05 0.0016 19.4 9.6 1 23 573 595 573 595 0.97

7 20 6.7e-07 6.2e-05 23.8 2.9 1 23 601 623 601 623 0.97

8 20 9.1e-05 0.0085 17.1 6.7 1 23 629 651 629 651 0.97

9 20 9e-05 0.0084 17.1 6.5 1 23 657 679 657 679 0.97

10 20 4.4e-07 4.1e-05 24.4 1.9 1 23 685 707 685 707 0.98

11 20 4.2e-05 0.004 18.2 8.1 1 23 713 735 713 735 0.98

12 20 2.3e-05 0.0021 19.0 6.6 1 23 741 763 741 763 0.98

13 20 4.7e-06 0.00044 21.2 5.2 1 23 769 791 769 791 0.98

14 20 3.9e-05 0.0037 18.3 6.5 1 23 797 819 797 819 0.97

15 20 1e-05 0.00095 20.1 7.4 1 23 825 847 825 847 0.98

16 20 2.7e-06 0.00026 21.9 6.0 1 23 853 875 853 875 0.98

17 20 2.8e-05 0.0026 18.7 7.8 1 23 881 903 881 903 0.97

18 20 2.3e-06 0.00022 22.1 4.1 1 23 909 931 909 931 0.96

19 20 0.00053 0.05 14.7 0.2 1 23 938 960 938 960 0.96

20 20 0.011 1 10.5 7.0 1 23 971 993 971 993 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00014	0.013	16.6	3.3	1	23	420	442	420	442	0.97
2	20	0.0052	0.49	11.6	0.7	1	20	448	467	448	470	0.94
3	20	2e-05	0.0018	19.2	5.4	1	23	489	511	489	511	0.98
4	20	0.00017	0.016	16.3	4.7	1	23	517	539	517	539	0.99
5	20	3.2e-05	0.003	18.6	5.3	1	23	545	567	545	567	0.97
6	20	1.7e-05	0.0016	19.4	9.6	1	23	573	595	573	595	0.97
7	20	6.7e-07	6.2e-05	23.8	2.9	1	23	601	623	601	623	0.97
8	20	9.1e-05	0.0085	17.1	6.7	1	23	629	651	629	651	0.97
9	20	9e-05	0.0084	17.1	6.5	1	23	657	679	657	679	0.97
10	20	4.4e-07	4.1e-05	24.4	1.9	1	23	685	707	685	707	0.98
11	20	4.2e-05	0.004	18.2	8.1	1	23	713	735	713	735	0.98
12	20	2.3e-05	0.0021	19.0	6.6	1	23	741	763	741	763	0.98
13	20	4.7e-06	0.00044	21.2	5.2	1	23	769	791	769	791	0.98
14	20	3.9e-05	0.0037	18.3	6.5	1	23	797	819	797	819	0.97
15	20	1e-05	0.00095	20.1	7.4	1	23	825	847	825	847	0.98
16	20	2.7e-06	0.00026	21.9	6.0	1	23	853	875	853	875	0.98
17	20	2.8e-05	0.0026	18.7	7.8	1	23	881	903	881	903	0.97
18	20	2.3e-06	0.00022	22.1	4.1	1	23	909	931	909	931	0.96
19	20	0.00053	0.05	14.7	0.2	1	23	938	960	938	960	0.96
20	20	0.011	1	10.5	7.0	1	23	971	993	971	993	0.99

Sequence Information

Coding Sequence: ATGAATCCAGATCATCATAATATTAATACGGGTGGTGGCCAACCACCAGGCAATTCCGAGCCTCAGAATCAAAGAGTTCAGTCAACACAGCAACAACAGCAGGCACAGGGAAATAATTTAACTCCTACAACATCTGCTACTGATTTGAGAGTGAACTCGGCGGCGGTAAATGTTGCTTTGTCGAGCGTAGCTAAATACTGGGTGTTTACAAATTTATTTCCTGGTCCACTCCCTCAAGTTTCTGTATATGGTTTACCCACTGGTGCAAGAATTGAAAATGGCAAAGCTGTACAGGATATTGGTCAAGCTCATACAAGTATTTTAAATGGAGATCCTAACATTATACTAGGACATGCTGGACAACCTCAAGTTACAGTTTCAGCAGCAGGTCAACAGATACCTGTGTCACAGATTATTGCAAATCAAACTACACAAGGCCATGATACTTTGGTGGGGCACAGCCAACAACAAGAAACAGCAGGTGGCAGCTCCTCTCTAGCAGTAGCTCAAACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCAAGTGGGTCATCACTCACAACACATCATGCAGCAACAGCTCATGGCAGCTGCGCGACCTGAGCACGCGAATCAACAGATTCAATTGACAGTAAGTGAAGATGGCATAGTGACAGTGGTAGAGCCGGGCGGAGGCAAGCTTGTAGACAAGGAGGAACTGCATGAAACTATCAAGATGCCCACCGACCATACACTCACTGTGCATCAGCTTCAGCAGATTGTTGGACATCACCAGGTTATCGATAGTGTAGTGCGCATAGAACAAGCGACGGGTGAACCAGCCAATATTCTGGTCACGCAAAACCCAGATGGTACTACCTCAATAGAAACTAGCGCAGGCGATCCTCTCTTAGTAAAAGATGAAAAGAATGTCGCCAAGATTGAATCCGCCCAATTTGCCATACCTGCTGAAATAAAAGACATTAAAGGAATAGATTTAAAGAGTGTTGGAGCATTGGGCATGGAGGGAGCAGTTGTCAAGATTTCCACTGGGACTGAGCATGATTTGCAGCATGCTATGTACAAAGTAAATGTTGAAGATCTCTCGCAACTTCTCGCTTACCATGAAGTATTTGGTAAACTTAACACTGAAAGCCAACCACAAGCTAAGACAATAGTAAATGAAGTTGAAGTAGAAGCCGGCACGAGTGCGGCCATGTCGGAGGCCGAGTCATCTCCTGGGCACCATTCTTGCGACATTTGCGGGAAGTTTTTCCAATTTCGATATCAACTCATAGTACACAGGCGATATCATGGAGAAAGCAAACCCTTCACATGTCAAGTTTGCGGTTCTGCATTTGCTAATCCAGTCGAATTATCTAAACACGGAAAATGTCACCTAGCTGGTGACCCCGCTGAGCGACAAGCGAAGAGGCTCGCGCAAGACAAGCCCTACGCATGCTCCACTTGCCACAAGACGTTTTCGCGGAAGGAGCACCTCGACAACCACGTACGCAGTCACACGGGAGAAACTCCTTATAGATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGTTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTCACATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCACATACAAATGACACACCGTTCAGATGCGATCTTTGCGGGAAGTCCTTCACGCGGAAGGAACATTTCACCAATCACATTTTGTGGCACACGGGCGAAACCCCACACCGTTGTGATTTTTGCTCCAAAACGTTTACACGCAAAGAGCACCTACTAAACCATGTCAGACAACACACTGGCGAGTCTCCCCACCGCTGCAACTTCTGCTCGAAGTCCTTCACGAGACGCGAACACCTCGTCAACCACGTGCGTCAGCACACCGGAGAGACCCCTTTCCAATGTGGCTACTGTCCTAAAGCTTTCACTAGGAAAGATCATTTAGTAAACCACGTCCGTCAGCACACTGGAGAATCGCCGCATAAATGCACTTTTTGTACGAAGTCCTTCACCCGTAAAGAACATTTGACAAACCACGTGCGGCAACACACCGGGGAGTCTCCGCATCGATGCACATACTGTGCTAAATCCTTCACAAGAAAGGAACATCTTACAAATCATGTTAGACAGCATACAGGCGAGACTCCCCACAAGTGCACGTATTGCCCGCGCGCGTTCTCCCGCAAGGAGCACCTCAACCAGCACGTGCGCCAGCACACGGGCGACGCTCCGCACACCTGCACCTACTGCAATAAGACCTACACCAGGAAGGAACACCTGGTGACGCATGTCCGACAACATACTGGGGAGACGCCGTTCAAATGCACCTACTGTTCGAAGTCGTTCTCACGCAAGGAACACCTAACTAACCATGTGCACATGCACACTGGTGAAACCCCACACAAGTGTCCCTTCTGCACCAAGACATTCTCAAGGAAGGAACACTTAACTAATCACGTCAGAATACATACGGGCGAGTCGCCACATAGATGCGATTTCTGCAACAAAACGTTCACAAGAAAAGAGCACCTCACCAACCACTTGAAGCAGCACACGGGCGACACTCCGCACGCCTGCAAAGTTTGTTCTAAACCATTCACAAGGAAAGAACACCTTATTACGCATATGAGATCCCACACTTGTGGCGAAAGGCCGTTTGTTTGCGGGGAATGTGGTAAATCGTTCCCGCTGAAAGGAAATCTACTGTTTCATGAAAGGTCCCACAATAAAGGAGCAAACGCAACCAACAAGTCGTTCCGTTGCGATATTTGTTCTAAGGAGTTTATGTGTAAAAGTCATTTATCATCACATCGGCGAACTCATACAGAAACAGGTGAAAATACAACGAGTACAGAGCCAACTGCTGAAAGTGAAGACTGTGGAGATTGTACTAAATGTGAGAAAGAGTCACCTGAGACACCTGAGAGAAAACATGATACTAGAGCATCATCTGAAAGCAGGACCATTGAAGCTCCTGAACAAAGTCCGACATCAAACGGAACAGTAATGCAAATTACCAGCCAGCAAGTACGAACAGGCACGGTATCAGGTGCAGCAAGTGTACCAACTGGCACGTTCACACACGCAGCGAGTACCCAACATCACGCGACAACGAGTATATCCCACCATCCTGTCACAGTGAACTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGNSEPQNQRVQSTQQQQQAQGNNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPTGARIENGKAVQDIGQAHTSILNGDPNIILGHAGQPQVTVSAAGQQIPVSQIIANQTTQGHDTLVGHSQQQETAGGSSSLAVAQTQQVPNNRVEFVQHHNIDMVNQVGHHSQHIMQQQLMAAARPEHANQQIQLTVSEDGIVTVVEPGGGKLVDKEELHETIKMPTDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAGDPLLVKDEKNVAKIESAQFAIPAEIKDIKGIDLKSVGALGMEGAVVKISTGTEHDLQHAMYKVNVEDLSQLLAYHEVFGKLNTESQPQAKTIVNEVEVEAGTSAAMSEAESSPGHHSCDICGKFFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCHICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNQHVRQHTGDAPHTCTYCNKTYTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHMHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCNKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLITHMRSHTCGERPFVCGECGKSFPLKGNLLFHERSHNKGANATNKSFRCDICSKEFMCKSHLSSHRRTHTETGENTTSTEPTAESEDCGDCTKCEKESPETPERKHDTRASSESRTIEAPEQSPTSNGTVMQITSQQVRTGTVSGAASVPTGTFTHAASTQHHATTSISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00160037;
80% Identity: -