Beup024709.1
Basic Information
- Insect
- Boloria euphrosyne
- Gene Symbol
- -
- Assembly
- GCA_951802675.2
- Location
- OX637895.1:7255196-7269341[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 18 6.8 1.5 1 23 265 291 265 291 0.93 2 17 0.13 13 7.3 0.2 2 23 319 341 318 341 0.92 3 17 0.27 26 6.3 5.5 2 23 362 383 361 383 0.97 4 17 0.18 18 6.9 0.2 1 23 387 409 387 409 0.97 5 17 0.024 2.3 9.6 0.5 1 23 414 437 414 437 0.89 6 17 0.00045 0.045 15.0 0.7 2 23 474 496 473 496 0.97 7 17 0.0013 0.13 13.5 7.4 1 23 502 524 502 524 0.98 8 17 0.052 5.1 8.6 0.6 1 19 530 548 530 553 0.89 9 17 0.0025 0.25 12.7 1.3 1 23 930 953 930 953 0.94 10 17 4.3 4.3e+02 2.5 0.2 2 23 974 996 973 996 0.93 11 17 4e-05 0.004 18.3 4.1 1 23 1045 1067 1045 1067 0.98 12 17 0.0043 0.42 12.0 5.1 1 23 1072 1095 1072 1095 0.98 13 17 0.041 4.1 8.9 1.0 1 23 1102 1125 1102 1125 0.94 14 17 0.095 9.4 7.7 0.9 1 23 1132 1155 1132 1155 0.94 15 17 0.00069 0.068 14.5 2.3 2 23 1162 1183 1161 1183 0.98 16 17 4.7e-05 0.0046 18.1 0.2 1 23 1189 1212 1189 1212 0.97 17 17 0.00027 0.026 15.8 7.0 1 23 1218 1241 1218 1241 0.98
Sequence Information
- Coding Sequence
- atgaatgtcgaaaataatattttgtattctgAATATGTGTGTAGATGCAAGTGTTGTTTAAATGATAACAACTTGAAAAGCTTGTGGGAACTGAATGTGAGTGATAATGGCGAAGGGGAAATATATGGACAAATGGTGGTGGAATGTTTCGCATTACCGtgGTATCCGTCGGATGAACCGGAGCACATTTGTGAATTTTGTGTCCTAAAACTTCAAGAAGCTTTCAATTTCAAGAAGAACATCTTGGCAGTAGAACATGCTTTATTGAATGGTGATGTCAAAATCAAAGAAGAACTAGAAGCCCAAATAGATACAGAAGAGAACAAGGTGTTAGTTGTGAAGTATGTACCGGTTGAAGATGAGTACCAGCATGTGGAGTATCTGGAAGATGAAGAGGGAGAAgaagataaagaACAGGTGTCAATAATAACGGAATTAGAACAAACAAGTTCAGGCCCTTCAACTCCGGGGGCCTCAAATGCGATTCCCCAAAGGAAATGGccaaagaagaaaaagaaacacGAACTAACAAAACTATACAAACAATACACTCAAGACAATTTAAAGGAAGCTGTAAAAGCAGTACGAAATGGGGAATTAACATGTAACAATGCAGCAATAAAATATGGCATCCCGAAGAAAACTTTGACTGTCAAAGTGAATACTTATGTAGACCGTGAACGTGTGGGTCAAACTGAAGATACCAACGACAAACATTACAAATTGATTGAAGAAATAAAACTTCTCCTCACTCACACCACAGCCGTGCCTTTTAAAACCAAAACGACTAGATACTACTGTTTTTACTGTTCCACGGACGGACAACATTACGAAGATCCAGACGAACTGAGAGAGCATACGAGGACTAAGCATGTGCATGAGTGGACGAAAATAGACATGTACATGAGACCGCAATGGTTGAACGAAGTAATAAAATTGGATGTAGAAGATTTACACTGCAAAATTTGCCTAACAATGGTGCCAGATTGGAACAATTTGTTTGTCCATCTGGGAGTAAACCACGACCTTGAGTTTGATATGGCGTATACCAGAATCATACCATATGCTTTGAGTTCTGACCTCAAATGTTTCCTTTGCAAGCAGAACTTCCACAATTTCGGTCATCTCGACAGCCACATGAACAACCATTATAGCAACTACATATGCTATGAGTGCGGAGATACATTTTTGTCAGCAAGTCGCTTGGATAAGCATTTGAACGTGCATAAAACGGGTAATTTTCCATGCGATTACTGTGAAAAAGTGTTCAAATTAGAGAAGTATAGAGCGAAACATGTCAGTTTAGTGCATATACAAGAAAGTACAGTGAAATGCTTGTATTGTCCCGAaaagtttgtaggcattttccAAAGGCATGTCCATGTGACGGAACACCATAAAGAAAAGATTAAATATATGACATGTGAATACTGTGGCAAAAGTTACACTTGGAAGCCATATTTTCTAGCGCATATGAGAAGAAAGCATGGTGCTGAGAAAAAGTATAAGTGTAAACATTGTGACAAgtgttttttaatgaaatatgaattaaaaaatcatatggTGAGGCATACCGGGGAAAAGAATTTTATCTGTGGTCAATGTGGGTTAGGGTTCGCGAGGATGGTTGGTTTAAAAAAGCATTGTCAGAATGATCATCAAGATGGTGCCACTGGAGAAGATGAATTAAAAGATTTGTGGAGTGAATATTATAATGATGGCGAACTTGAGATATATGGTGAAATGTTGAGTGATTGCTTTGCATTAAATTGGGAACAGCCAACTATAAACTCTGATTCAGATATAGAACATATTTGTAGCACATGTGTATCTAAATTGCATGACGCTGTGAGttttaaaaaggaaatattattatctgCACAATTGTTACtggaagaaattaaaaatgattcatATGAAGAAAATATGGAGGATGATTCTGATACATACATAGAAACAGAGTATCTGAACATCGAGTATTTAGAGGATGAAGATATTGGAAAAGAAAAGTCAGaAGAGGACTTCAAGAAATGTCTTGAGGCCGTTAAAAGTAAAACTCTGTCGCAACACAAGGCATCTTTGTTGTATAATGTACCGAGATGGACAATCCGAAATGCACTCGataAGGTAAAAGTGGAGAAGGATGTGGAGGAGATGCAGAGCAATACCTTGTCGCAGTACAAGGCAACCTCATACAGTGTGCCGAAGAAGGCAAAGCATAAGGAGACTGTCTCAAGTGACTCAAaaGTGCCagaaactaaaaagaaaaaagaaataaaacagaaaaatgaaaaaaatatgaaaagtgATGATAATTTGGTGGATTCAGTAAAATCGAACGAATCAATCAATGTTTCaaagaaaaaagttaaagaGTACTCAGAGACGAACTTAAAGAAGTGTGTAGAAGCTGTTCAGACAAATAGATTGTCGCAAAGCAAGGCGTCCATCATGTACAATGTGCCACAGCTAGCCATACATGACGCGTTAGAggAAAGCAAATTGTCTTCATCAAGCGTACCGGTGGAGTTGATAAAACCAAACCAATCCAAGCCTTACACGGAGGAGGATTACAAGAAGTGTTTGGAAGCAGTTAAGAATAGAACCATGTCCCGTGTTCAGGCCTGCAAGACTTATAATGTACCGATGAGCTCCCTCTATGCCgctataaaaaAATATTTCAACGACGCAGATAAAAAAACAGACGCGCAAATGGCTCAAGAAAATGTGGattgtgttataaattatacGAATGCAACACCGTTCAGCGGGTTCTATCGAGCGGGATATAGCTGTCTCTTTTGctctaaaatatttgaagtaccggctcatttaaaaaaacacacaTTAGAAACACACAGCAAACAGCAAGCGAGACTCAGACCGTCGAGAGCAGTTAAACTCGACGTGACAGGCCTAAAGTGTGAAATATGCGAAGTAAAAATCGAAACACTTGAAAGTGTTTTGCAACACTTGCACTCGATTCACGGGAAGATAATTTACACTTGTATACGCGAATTCTTCGTACCATTCAAATTTCAAAGTGAAGTGTTGAAGTGTGCGGTTTGTTCAGAAGAGTTTCACTGTTGCAAGCTGTTAAACGACCATATGAATAGTAATCACTTTAAAAATTTTGAGTGTCATGAATGTGGACGCGGGTTCATAAGTAAACATTATTTAAGAGAGCACAGACTTCGACATGAAACAGGAGTGTTCAAGTGTAAATTTTGCCACAAAGTGTTTTCAAGCAAAGTGCGCACTACCTCCCACGAACGCACAGTACATATATACAATAACTATTTATACACTTGCGGGTATTGTTCGGAAAGATTTTCCAGTTTACCAAAGAAAAAGCAGCACGAAGCAACACAACATGACACCGaactaactttatttaattgcaCAGCGTGTAGCAAATCGTTCCAAGATTTACGTGTACTAAGAACTcatgaaaaaaatgttcacTTAATGATGCGTGCACAAAAGTGTAAAAAGTGTGAATTCAGTGCGTACTCGTCACAGAATTTGAAAAGGCATATGTTAACACACACTAAGGAGAATAATTTTACATGCGACATTTGTTGGAAATCGTTTGGAGTGAAGTGGTCACTTCGAGAGCATATTATGCGGATGCATGCGAATGATAGGAGATTCAAGTGCGAACACTGTGGGCAGTCGTTTGTGCACAAGTGTGCTTGGAAAACGCATATGCTGACAAAGCATGACGAACCCgagtag
- Protein Sequence
- MNVENNILYSEYVCRCKCCLNDNNLKSLWELNVSDNGEGEIYGQMVVECFALPWYPSDEPEHICEFCVLKLQEAFNFKKNILAVEHALLNGDVKIKEELEAQIDTEENKVLVVKYVPVEDEYQHVEYLEDEEGEEDKEQVSIITELEQTSSGPSTPGASNAIPQRKWPKKKKKHELTKLYKQYTQDNLKEAVKAVRNGELTCNNAAIKYGIPKKTLTVKVNTYVDRERVGQTEDTNDKHYKLIEEIKLLLTHTTAVPFKTKTTRYYCFYCSTDGQHYEDPDELREHTRTKHVHEWTKIDMYMRPQWLNEVIKLDVEDLHCKICLTMVPDWNNLFVHLGVNHDLEFDMAYTRIIPYALSSDLKCFLCKQNFHNFGHLDSHMNNHYSNYICYECGDTFLSASRLDKHLNVHKTGNFPCDYCEKVFKLEKYRAKHVSLVHIQESTVKCLYCPEKFVGIFQRHVHVTEHHKEKIKYMTCEYCGKSYTWKPYFLAHMRRKHGAEKKYKCKHCDKCFLMKYELKNHMVRHTGEKNFICGQCGLGFARMVGLKKHCQNDHQDGATGEDELKDLWSEYYNDGELEIYGEMLSDCFALNWEQPTINSDSDIEHICSTCVSKLHDAVSFKKEILLSAQLLLEEIKNDSYEENMEDDSDTYIETEYLNIEYLEDEDIGKEKSEEDFKKCLEAVKSKTLSQHKASLLYNVPRWTIRNALDKVKVEKDVEEMQSNTLSQYKATSYSVPKKAKHKETVSSDSKVPETKKKKEIKQKNEKNMKSDDNLVDSVKSNESINVSKKKVKEYSETNLKKCVEAVQTNRLSQSKASIMYNVPQLAIHDALEESKLSSSSVPVELIKPNQSKPYTEEDYKKCLEAVKNRTMSRVQACKTYNVPMSSLYAAIKKYFNDADKKTDAQMAQENVDCVINYTNATPFSGFYRAGYSCLFCSKIFEVPAHLKKHTLETHSKQQARLRPSRAVKLDVTGLKCEICEVKIETLESVLQHLHSIHGKIIYTCIREFFVPFKFQSEVLKCAVCSEEFHCCKLLNDHMNSNHFKNFECHECGRGFISKHYLREHRLRHETGVFKCKFCHKVFSSKVRTTSHERTVHIYNNYLYTCGYCSERFSSLPKKKQHEATQHDTELTLFNCTACSKSFQDLRVLRTHEKNVHLMMRAQKCKKCEFSAYSSQNLKRHMLTHTKENNFTCDICWKSFGVKWSLREHIMRMHANDRRFKCEHCGQSFVHKCAWKTHMLTKHDEPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00212349;
- 90% Identity
- iTF_00212349;
- 80% Identity
- iTF_00212349;