Basic Information

Insect: Boloria euphrosyne
Gene Symbol: -
Assembly: GCA_951802675.2
Location: OX637880.1:9461910-9473400[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.6e-05 0.0016 19.6 5.3 1 23 14 36 14 36 0.97

2 16 8.5e-06 0.00084 20.5 9.6 1 23 42 64 42 64 0.97

3 16 3.4e-07 3.3e-05 24.9 2.9 1 23 70 92 70 92 0.97

4 16 4.6e-05 0.0045 18.2 6.7 1 23 98 120 98 120 0.97

5 16 4.5e-05 0.0045 18.2 6.5 1 23 126 148 126 148 0.97

6 16 2.2e-07 2.2e-05 25.5 1.9 1 23 154 176 154 176 0.98

7 16 2.1e-05 0.0021 19.2 8.1 1 23 182 204 182 204 0.98

8 16 1.1e-05 0.0011 20.1 6.6 1 23 210 232 210 232 0.98

9 16 7.5e-07 7.4e-05 23.8 5.3 1 23 238 260 238 260 0.98

10 16 2e-05 0.002 19.3 6.5 1 23 266 288 266 288 0.97

11 16 5.1e-06 0.00051 21.2 7.4 1 23 294 316 294 316 0.98

12 16 1.4e-06 0.00014 22.9 6.0 1 23 322 344 322 344 0.98

13 16 1.4e-05 0.0014 19.8 7.8 1 23 350 372 350 372 0.97

14 16 4e-06 0.0004 21.5 3.9 1 23 378 400 378 400 0.96

15 16 0.0002 0.02 16.1 0.2 1 23 407 429 407 429 0.97

16 16 0.0054 0.53 11.6 7.0 1 23 440 462 440 462 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.6e-05	0.0016	19.6	5.3	1	23	14	36	14	36	0.97
2	16	8.5e-06	0.00084	20.5	9.6	1	23	42	64	42	64	0.97
3	16	3.4e-07	3.3e-05	24.9	2.9	1	23	70	92	70	92	0.97
4	16	4.6e-05	0.0045	18.2	6.7	1	23	98	120	98	120	0.97
5	16	4.5e-05	0.0045	18.2	6.5	1	23	126	148	126	148	0.97
6	16	2.2e-07	2.2e-05	25.5	1.9	1	23	154	176	154	176	0.98
7	16	2.1e-05	0.0021	19.2	8.1	1	23	182	204	182	204	0.98
8	16	1.1e-05	0.0011	20.1	6.6	1	23	210	232	210	232	0.98
9	16	7.5e-07	7.4e-05	23.8	5.3	1	23	238	260	238	260	0.98
10	16	2e-05	0.002	19.3	6.5	1	23	266	288	266	288	0.97
11	16	5.1e-06	0.00051	21.2	7.4	1	23	294	316	294	316	0.98
12	16	1.4e-06	0.00014	22.9	6.0	1	23	322	344	322	344	0.98
13	16	1.4e-05	0.0014	19.8	7.8	1	23	350	372	350	372	0.97
14	16	4e-06	0.0004	21.5	3.9	1	23	378	400	378	400	0.96
15	16	0.0002	0.02	16.1	0.2	1	23	407	429	407	429	0.97
16	16	0.0054	0.53	11.6	7.0	1	23	440	462	440	462	0.99

Sequence Information

Coding Sequence: ATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATATGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTCACATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCACATACAAATGACACACCGTTCAGATGCGATCTTTGCGGGAAGTCCTTCACGAGGAAGGAACACTTCACCAATCACATATTGTGGCACACTGGCGAAACCCCACACCGTTGCGATTTTTGTTCCaaaacgtttacacgcaaagAGCACCTACTAAACCACGTGCGACAGCACACCGGCGAGTCTCCCCACCGCTGCAACTTCTGCTCGAAGTCCTTCACGAGACGCGAACACCTCGTCAACCACGTGCGTCAGCACACTGGCGAGACCCCCTTCCAATGTGGCTACTGTCCTAAAGCATTCACTAGAAAAGATCATTTAGTAAACCACGTCCGTCAGCACACTGGAGAGTCGCCGCATAAATGCACTTTCTGTACGAAGTCCTTCACGCGTAAAGAACATTTAACAAACCACGTGCGGCAACACACCGGGGAGTCCCCGCATCGATGCACATACTGCGCTAAATCCTTCACGAGAAAGGAACATCTCACAAATCACGTTAGACAGCATACAGGCGAGACTCCCCACAAGTGCACGTATTGCCCGCGCGCGTTCTCCCGCAAGGAGCACCTGAACCAGCACATTCGCCAGCACACGGGCGATACTCCGCACACCTGCACCTACTGCAATAAGACCTACACCAGGAAGGAGCACCTGGTGACGCATGTTCGACAACATACTGGGGAGACGCCGTTCAAATGCACCTACTGTTCGAAGTCGTTCTCACGCAAGGAACACCTAACTAACCATGTGCACATGCACACTGGTGAAACCCCACACAAGTGTCCCTTCTGCACCAAGACATTCTCAAGAAAGGAACACTTAACTAATCACGTCAGAATACATACGGGTGAATCGCCACATAGATGCGATTTCTGCAACAAAACGTTCACAAGAAAGGAACATCTCACCAACCACTTGAAGCAGCACACGGGCGACACTCCGCACGCCTGCAAAGTTTGTTCAAAGCCTTTCACAAGGAAAGAACATCTTATTACACATTTGAGATCCCACACTTGTGGCGAGCGGCCATACGTTTGCGGGGAATGTGGTAAATCGTTCCCGCTAAAAGGAAATCTACTGTTTCATGAAAGATCCCACAATAAAGGCGCAAATGCAACCAACAAGTCGTTCCGTTGCGAGATTTGTTCAAAAGAATTTATGTGTAAAAGTCATTTATCATCACATCGGAGAACTCATACAGAAACAGGTGAAAATACAACAAATACAGAGCCGGCTGCTGAAAGTGAAGACTGTGGAGATTGTACTAAATGTGAGAATGAGTCACCTGAAATACCTGAAAGAAAACACGATATAAGagcatCGTCTGAAAGCAGGACCACAGAAGCTCCTGAACAAAGTCCGACATCAAACGAAACAGTAATGCAAATTACCAGCCAGCAGGTACGAACAGGCACAGTAACAAGTGCAGCAAGTGTGTCAACTGGCACATTCACACACACAGCGAGTACCCAACACCACGCGACGACGAGTATATCCCATCATCCTGTCACAGTGAACTACTAG
Protein Sequence: MVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCHICGKKYTRKEHLVNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNQHIRQHTGDTPHTCTYCNKTYTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHMHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCNKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLITHLRSHTCGERPYVCGECGKSFPLKGNLLFHERSHNKGANATNKSFRCEICSKEFMCKSHLSSHRRTHTETGENTTNTEPAAESEDCGDCTKCENESPEIPERKHDIRASSESRTTEAPEQSPTSNETVMQITSQQVRTGTVTSAASVSTGTFTHTASTQHHATTSISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00212767;
90% Identity: iTF_00212767;
80% Identity: iTF_00212767;